ggKbase home page

L3_058_000G1_scaffold_1300

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000G1_scaffold_1300_1
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1695..2591
DNA (897bp) protein (299aa)
Formate/nitrate transporter n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7Y8_PSEDT
Formate/nitrate transporter {ECO:0000313|EMBL:EGB97472.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
putative FNT family transporter
L3_058_000G1_scaffold_1300_2
Pseudomonas sp. FGI182, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2594..3652)
DNA (1059bp) protein (353aa)
Zinc-dependent hydrolase n=2 Tax=Pseudomonas RepID=F8G1W0_PSEPU
zinc-dependent hydrolase
Hydrolase {ECO:0000313|EMBL:AHD16026.1}; TaxID=1259844 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FGI182.;"
L3_058_000G1_scaffold_1300_3
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3812..4888
DNA (1077bp) protein (359aa)
Diguanylate cyclase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7Y5_PSEDT
Diguanylate cyclase {ECO:0000313|EMBL:EGB97480.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
diguanylate cyclase
L3_058_000G1_scaffold_1300_4
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4940..7504
DNA (2565bp) protein (855aa)
PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7Y4_PSEDT
PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EGB97479.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
putative sensory box protein
L3_058_000G1_scaffold_1300_5
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7575..7904)
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7Y3_PSEDT
Uncharacterized protein {ECO:0000313|EMBL:EGB97478.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
hypothetical protein
L3_058_000G1_scaffold_1300_6
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8030..8938)
DNA (909bp) protein (303aa)
LysR family transcriptional regulator n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7Y2_PSEDT
LysR family transcriptional regulator {ECO:0000313|EMBL:EGB97477.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
LysR family transcriptional regulator
L3_058_000G1_scaffold_1300_7
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9051..9809
DNA (759bp) protein (253aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7Y1_PSEDT
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EGB97476.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
short-chain dehydrogenase/reductase SDR
L3_058_000G1_scaffold_1300_8
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9832..10689)
DNA (858bp) protein (286aa)
Secretion protein HlyD family protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7Y0_PSEDT
Secretion protein HlyD family protein {ECO:0000313|EMBL:EGB97475.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
secretion protein HylD
L3_058_000G1_scaffold_1300_9
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10702..10908)
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7X9_PSEDT
Uncharacterized protein {ECO:0000313|EMBL:EGB97474.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
hypothetical protein
L3_058_000G1_scaffold_1300_10
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10895..12883)
DNA (1989bp) protein (663aa)
Putative ArAE family transporter n=1 Tax=Pseudomonas putida NBRC 14164 RepID=T2H357_PSEPU
putative ArAE family transporter
Putative ArAE family transporter {ECO:0000313|EMBL:BAN52942.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L3_058_000G1_scaffold_1300_11
Pseudomonas sp. 10-1B, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13129..13245)
DNA (117bp) protein (39aa)
Uncharacterized protein n=14 Tax=Pseudomonas RepID=A5VZN4_PSEP1
hypothetical protein
ATP-dependent helicase {ECO:0000313|EMBL:KIY38598.1}; TaxID=1546029 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 10-1B.;"
L3_058_000G1_scaffold_1300_12
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13381..13542)
DNA (162bp) protein (54aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7X5_PSEDT
Uncharacterized protein {ECO:0000313|EMBL:EGB97501.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
hypothetical protein
L3_058_000G1_scaffold_1300_13
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13610..13939)
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7X4_PSEDT
Uncharacterized protein {ECO:0000313|EMBL:EGB97500.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
hypothetical protein
L3_058_000G1_scaffold_1300_14
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14003..14698)
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7X3_PSEDT
Uncharacterized protein {ECO:0000313|EMBL:EGB97499.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
hypothetical protein
L3_058_000G1_scaffold_1300_15
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14850..17696
DNA (2847bp) protein (949aa)
RNA polymerase-associated protein RapA {ECO:0000256|HAMAP-Rule:MF_01821, ECO:0000256|SAAS:SAAS00010031}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01821, ECO:0000256|SAAS:SAAS00010033};; ATP-dependent helicase HepA {ECO:0000256|HAMAP-Rule:MF_01821}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
RNA polymerase-associated protein RapA n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7X2_PSEDT
ATP-dependent helicase HepA
L3_058_000G1_scaffold_1300_16
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17963..20227
DNA (2265bp) protein (755aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7X1_PSEDT
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EGB97497.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
diguanylate cyclase/phosphodiesterase
L3_058_000G1_scaffold_1300_17
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20127..21014)
DNA (888bp) protein (296aa)
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7X0_PSEDT
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:EGB97496.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
3-hydroxyisobutyrate dehydrogenase
L3_058_000G1_scaffold_1300_18
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21180..21491)
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7W9_PSEDT
Uncharacterized protein {ECO:0000313|EMBL:EGB97495.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
hypothetical protein
L3_058_000G1_scaffold_1300_19
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21851..22966
DNA (1116bp) protein (372aa)
Leucine ABC transporter subunit substrate-binding protein LivK n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7W8_PSEDT
Leucine ABC transporter subunit substrate-binding protein LivK {ECO:0000313|EMBL:EGB97494.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
braC; branched-chain amino acid ABC transporter substrate-binding protein
L3_058_000G1_scaffold_1300_20
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23152..24075
DNA (924bp) protein (308aa)
L-isoleucine ABC transporter membrane protein / L-leucine ABC transporter membrane protein / L-valine ABC transporter membrane protein n=12 Tax=Pseudomonas RepID=A5VZM5_PSEP1
Inner-membrane translocator
Branched-chain amino acid ABC transporter permease protein BraD {ECO:0000313|EMBL:BAN52933.1}; TaxID=1211579 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida NBRC 14164.;"
L3_058_000G1_scaffold_1300_21
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24072..25328
DNA (1257bp) protein (419aa)
Leucine/isoleucine/valine transporter permease subunit n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7W6_PSEDT
Leucine/isoleucine/valine transporter permease subunit {ECO:0000313|EMBL:EGB97492.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
livM; leucine/isoleucine/valine transporter permease subunit
L3_058_000G1_scaffold_1300_22
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25325..26092
DNA (768bp) protein (256aa)
Leucine/isoleucine/valine transporter ATP-binding subunit n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7W5_PSEDT
Leucine/isoleucine/valine transporter ATP-binding subunit {ECO:0000313|EMBL:EGB97491.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
livG; leucine/isoleucine/valine transporter ATP-binding subunit
L3_058_000G1_scaffold_1300_23
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26093..26794
DNA (702bp) protein (234aa)
ABC transporter-like protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7W4_PSEDT
ABC transporter-like protein {ECO:0000313|EMBL:EGB97490.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
branched chain amino acid ABC transporter ATP-binding protein
L3_058_000G1_scaffold_1300_24
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27004..27678
DNA (675bp) protein (225aa)
Putative lipoprotein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7W3_PSEDT
Putative lipoprotein {ECO:0000313|EMBL:EGB97489.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
hypothetical protein
L3_058_000G1_scaffold_1300_25
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27782..29389
DNA (1608bp) protein (536aa)
FAD dependent oxidoreductase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7W2_PSEDT
FAD dependent oxidoreductase {ECO:0000313|EMBL:EGB97488.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
FAD dependent oxidoreductase
L3_058_000G1_scaffold_1300_26
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29500..29964)
DNA (465bp) protein (155aa)
17 kDa surface antigen n=8 Tax=Pseudomonas RepID=B0KUA7_PSEPG
membrane protein
Membrane protein {ECO:0000313|EMBL:ERK98147.1}; TaxID=1299319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida LF54.;"
L3_058_000G1_scaffold_1300_27
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30111..30350
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7W0_PSEDT
Uncharacterized protein {ECO:0000313|EMBL:EGB97486.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
hypothetical protein
L3_058_000G1_scaffold_1300_28
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30463..31110)
DNA (648bp) protein (216aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7V9_PSEDT
pyridoxamine 5'-phosphate oxidase
L3_058_000G1_scaffold_1300_29
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31129..32100)
DNA (972bp) protein (324aa)
OmpA/MotB domain-containing protein n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7V8_PSEDT
OmpA/MotB domain-containing protein {ECO:0000313|EMBL:EGB97484.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
flagellar motor protein MotB
L3_058_000G1_scaffold_1300_30
Pseudomonas sp. TJI-51, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32200..33345)
DNA (1146bp) protein (382aa)
Beta-lactamase n=1 Tax=Pseudomonas sp. (strain TJI-51) RepID=F0E7V7_PSEDT
Beta-lactamase {ECO:0000313|EMBL:EGB97483.1}; TaxID=985010 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain TJI-51).;"
beta-lactamase
Displaying items 1-30 of 38 in total

View Taxonomy