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L3_058_000G1_scaffold_2568

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000G1_scaffold_2568_1
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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258..935
DNA (678bp) protein (226aa)
Putative response regulator MprA n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX64_9FIRM
Putative response regulator MprA {ECO:0000313|EMBL:EHM37902.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
response regulator receiver
L3_058_000G1_scaffold_2568_2
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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949..1698
DNA (750bp) protein (250aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NZ88_9FIRM
ATP-binding protein
L3_058_000G1_scaffold_2568_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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1695..2258
DNA (564bp) protein (188aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
dltS; sensor protein DltS (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (Fragment) n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BZB9_9CLOT
L3_058_000G1_scaffold_2568_4
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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2427..3518
DNA (1092bp) protein (364aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CI27_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF52635.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
L3_058_000G1_scaffold_2568_5
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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3553..4626
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YQW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM50680.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
putative membrane protein
L3_058_000G1_scaffold_2568_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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4648..5601
DNA (954bp) protein (318aa)
Putative glucokinase n=3 Tax=Clostridiales RepID=G9YQW7_9FIRM
Putative glucokinase {ECO:0000313|EMBL:EHM50681.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
ROK family glucokinase
L3_058_000G1_scaffold_2568_7
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5758..6030)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2U3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM97364.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_058_000G1_scaffold_2568_8
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6095..6772)
DNA (678bp) protein (226aa)
Transcriptional regulatory protein n=2 Tax=Clostridiales RepID=G9YRV5_9FIRM
Transcriptional regulatory protein {ECO:0000256|PIRNR:PIRNR006171}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
fused response regulator receiver/hypothetical protein
L3_058_000G1_scaffold_2568_9
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6757..8394)
DNA (1638bp) protein (546aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
citS; sensor protein CitS (EC:2.7.13.3)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CLR6_9FIRM
L3_058_000G1_scaffold_2568_10
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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8603..9085
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TLN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC73150.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_058_000G1_scaffold_2568_11
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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9125..9910
DNA (786bp) protein (262aa)
ATP synthase subunit a n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YRV7_9FIRM
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
F0F1 ATP synthase subunit A
L3_058_000G1_scaffold_2568_12
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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9941..10159
DNA (219bp) protein (73aa)
ATP synthase F0 subcomplex C subunit (EC:3.6.3.14)
ATP synthase F0, C subunit n=3 Tax=Clostridiales RepID=G9YRV8_9FIRM
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_058_000G1_scaffold_2568_13
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10173..10661
DNA (489bp) protein (163aa)
ATP synthase, F0 subunit b (EC:3.6.3.14)
ATP synthase subunit b n=2 Tax=Clostridiales RepID=G9YRV9_9FIRM
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_058_000G1_scaffold_2568_14
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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10658..11182
DNA (525bp) protein (175aa)
ATP synthase, F1 delta subunit (EC:3.6.3.14)
ATP synthase subunit delta n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TI81_9FIRM
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_058_000G1_scaffold_2568_15
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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11179..12699
DNA (1521bp) protein (507aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
atpA; ATP synthase F1, alpha subunit (EC:3.6.3.14)
ATP synthase subunit alpha n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YRW1_9FIRM
L3_058_000G1_scaffold_2568_16
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12687..13574
DNA (888bp) protein (296aa)
atpG; ATP synthase F1, gamma subunit (EC:3.6.3.14)
ATP synthase gamma chain n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2ATS2_9CLOT
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_058_000G1_scaffold_2568_17
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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13644..15044
DNA (1401bp) protein (467aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
ATP synthase subunit beta n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UQT0_9FIRM
AtpD; F0F1-type ATP synthase subunit beta
L3_058_000G1_scaffold_2568_18
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15044..15448
DNA (405bp) protein (135aa)
atpC; ATP synthase F1, epsilon subunit (EC:3.6.3.14)
ATP synthase epsilon chain n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TLL7_9FIRM
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_058_000G1_scaffold_2568_19
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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15734..16900
DNA (1167bp) protein (389aa)
2-hydroxyglutaryl-CoA dehydratase, D-component n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NW67_9FIRM
2-hydroxyglutaryl-CoA dehydratase, D-component {ECO:0000313|EMBL:EDM99724.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB
L3_058_000G1_scaffold_2568_20
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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16897..17673
DNA (777bp) protein (259aa)
Putative CoA-substrate-specific enzyme activase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NW66_9FIRM
Putative CoA-substrate-specific enzyme activase {ECO:0000313|EMBL:EDM99723.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
CoA-substrate-specific enzyme activase, putative
L3_058_000G1_scaffold_2568_21
unknown

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17670..17927
DNA (258bp) protein (86aa)

This feature has no annotations

L3_058_000G1_scaffold_2568_22
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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17924..19060
DNA (1137bp) protein (379aa)
Cysteine desulfurase {ECO:0000313|EMBL:EOC99415.1}; EC=2.8.1.7 {ECO:0000313|EMBL:EOC99415.1};; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
Cysteine desulfurase n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CL32_9CLOT
cysteine desulfurase
L3_058_000G1_scaffold_2568_23
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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19281..20186
DNA (906bp) protein (302aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
Quinolinate synthetase complex, A subunit n=2 Tax=Lachnospiraceae RepID=F7JL40_9FIRM
nadA; Quinolinate synthetase A
L3_058_000G1_scaffold_2568_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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20209..21402
DNA (1194bp) protein (398aa)
Aspartate oxidase (EC:1.4.3.16)
FAD binding domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B889_RUMGN
FAD binding domain protein {ECO:0000313|EMBL:EDN75871.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_058_000G1_scaffold_2568_25
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21399..22259
DNA (861bp) protein (287aa)
Nicotinate-nucleotide diphosphorylase (Carboxylating) n=1 Tax=Clostridium sp. ASF502 RepID=N2ANB0_9CLOT
Nicotinate-nucleotide diphosphorylase (Carboxylating) {ECO:0000313|EMBL:EMZ29626.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
nadC; nicotinate-nucleotide diphosphorylase
L3_058_000G1_scaffold_2568_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22278..22826
DNA (549bp) protein (183aa)
HTH domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CMG3_9FIRM
HTH domain protein {ECO:0000313|EMBL:EDY33521.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Predicted small molecule binding protein (contains 3H domain)
L3_058_000G1_scaffold_2568_27
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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22957..23505
DNA (549bp) protein (183aa)
Putative stage V sporulation protein T n=2 Tax=Clostridiales RepID=G9YS97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56705.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
spoVT; transcriptional regulator spoVT
L3_058_000G1_scaffold_2568_28
unknown

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comp(23380..23622)
DNA (243bp) protein (81aa)

This feature has no annotations

L3_058_000G1_scaffold_2568_29
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23676..24215
DNA (540bp) protein (180aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
2'-5' RNA ligase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYB6_9CLOT
2'-5' RNA ligase
Displaying 29 items

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