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L3_058_000G1_scaffold_3541

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000G1_scaffold_3541_1
unknown

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1..219
DNA (219bp) protein (73aa)

This feature has no annotations

L3_058_000G1_scaffold_3541_2
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(131..664)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M850_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS66846.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_058_000G1_scaffold_3541_3
unknown

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1008..1133
DNA (126bp) protein (42aa)

This feature has no annotations

L3_058_000G1_scaffold_3541_4
Paenibacillus pini, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1641..2114
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Paenibacillus sp. HW567 RepID=UPI0003677833
Two component transcriptional regulator {ECO:0000313|EMBL:GAF08513.1}; TaxID=1236976 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus pini JCM 16418.;"
hypothetical protein
L3_058_000G1_scaffold_3541_5
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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2714..8860
DNA (6147bp) protein (2049aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2B9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM97506.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
nucleic acid binding OB-fold tRNA/helicase-type
L3_058_000G1_scaffold_3541_6
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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8956..10182
DNA (1227bp) protein (409aa)
YibE/F family protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5ICR5_9FIRM
YibE/F family protein {ECO:0000313|EMBL:CCY39893.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
YibE/F family protein
L3_058_000G1_scaffold_3541_7
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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10225..10953
DNA (729bp) protein (243aa)
Peptidase, M23 family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NU00_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:EDN00347.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
putative metalloendopeptidase
L3_058_000G1_scaffold_3541_8
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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11221..12408
DNA (1188bp) protein (396aa)
Sporulation integral membrane protein YlbJ n=3 Tax=Clostridiales RepID=H1CLU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55029.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
putative membrane protein
L3_058_000G1_scaffold_3541_9
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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12496..12705
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P183_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM97775.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_058_000G1_scaffold_3541_10
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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12955..13377
DNA (423bp) protein (141aa)
Transcriptional regulator, Rrf2 family n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C390_9FIRM
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:EDS74124.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
Putative transcriptional regulator (rrf2 family)
L3_058_000G1_scaffold_3541_11
Eubacterium hallii CAG:12, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13501..14688
DNA (1188bp) protein (396aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331};; TaxID=1263078 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium hallii CAG:12.;"
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase NifS n=2 Tax=Eubacterium RepID=C0ESC6_9FIRM
L3_058_000G1_scaffold_3541_12
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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14678..15106
DNA (429bp) protein (143aa)
Fe-S iron-sulfur cluster assembly protein NifU family n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5ARK7_9FIRM
Fe-S iron-sulfur cluster assembly protein NifU family {ECO:0000313|EMBL:CCX46000.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
iscU; iron-sulfur cluster assembly protein IscU
L3_058_000G1_scaffold_3541_13
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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15320..16639
DNA (1320bp) protein (440aa)
UPF0597 protein BN795_00485 n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D3N9_9FIRM
UPF0597 protein BN795_00485 {ECO:0000256|HAMAP-Rule:MF_01845}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_058_000G1_scaffold_3541_14
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16708..17472)
DNA (765bp) protein (255aa)
Putative IclR family transcriptional regulator n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UB44_9FIRM
Putative IclR family transcriptional regulator {ECO:0000313|EMBL:CDC67982.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
putative IclR family transcriptional regulator
L3_058_000G1_scaffold_3541_15
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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17716..18162
DNA (447bp) protein (149aa)
fabZ; beta-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ (EC:4.2.1.-)
Beta-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TJG0_9FIRM
Beta-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000313|EMBL:CDC67981.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_058_000G1_scaffold_3541_16
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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18315..18413
DNA (99bp) protein (33aa)
abfD; gamma-aminobutyrate metabolism dehydratase/isomerase (EC:4.2.1.- 5.3.3.3)
Gamma-aminobutyrate metabolism dehydratase/isomerase n=2 Tax=Oscillibacter RepID=U2QC19_9FIRM
Gamma-aminobutyrate metabolism dehydratase/isomerase {ECO:0000313|EMBL:ERK57494.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
Displaying 16 items

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