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L3_058_000G1_scaffold_1578

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000G1_scaffold_1578_1
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..124
DNA (123bp) protein (41aa)
Electron transfer flavoprotein FAD-binding domain protein (Fragment) n=2 Tax=Oscillibacter RepID=U2S195_9FIRM
Electron transfer flavoprotein FAD-binding domain protein {ECO:0000313|EMBL:ERK59503.1}; Flags: Fragment;; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
etfA; electron transfer flavoprotein alpha subunit
L3_058_000G1_scaffold_1578_2
unknown

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129..317
DNA (189bp) protein (63aa)

This feature has no annotations

L3_058_000G1_scaffold_1578_3
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(239..565)
DNA (327bp) protein (109aa)
UPF0145 protein BN807_00835 n=2 Tax=Clostridiales RepID=R7GZW8_9FIRM
UPF0145 protein BN807_00835 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
hypothetical protein
L3_058_000G1_scaffold_1578_4
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(686..2839)
DNA (2154bp) protein (718aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ftsH; cell division protein FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YKR4_9FIRM
L3_058_000G1_scaffold_1578_5
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3089..3871
DNA (783bp) protein (261aa)
rRNA methyltransferase (EC:2.1.1.-)
RNA methyltransferase, TrmH family, group 3 n=3 Tax=Clostridiales RepID=G9YKR6_9FIRM
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:ERI73519.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_058_000G1_scaffold_1578_6
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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3923..6241
DNA (2319bp) protein (773aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NT88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN00651.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_058_000G1_scaffold_1578_7
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6286..6585
DNA (300bp) protein (100aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VNZ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC04752.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_058_000G1_scaffold_1578_8
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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6727..8652
DNA (1926bp) protein (642aa)
Chaperone protein HtpG n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YMD4_9FIRM
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
htpG; chaperone protein HtpG
L3_058_000G1_scaffold_1578_9
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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8799..9014
DNA (216bp) protein (72aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=G9YMD3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56922.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_058_000G1_scaffold_1578_10
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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9292..9540
DNA (249bp) protein (83aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2AQT3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO33045.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_058_000G1_scaffold_1578_11
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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9746..11140
DNA (1395bp) protein (465aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
SelA; selenocysteine synthase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2V1_9FIRM
L3_058_000G1_scaffold_1578_12
Clostridium sp. CAG:226, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11156..13060
DNA (1905bp) protein (635aa)
selB; selenocysteine-specific translation elongation factor SelB (EC:2.7.7.4)
Selenocysteine-specific translation elongation factor SelB n=1 Tax=Clostridium sp. CAG:226 RepID=R5B9H9_9CLOT
Selenocysteine-specific translation elongation factor SelB {ECO:0000313|EMBL:CCX50934.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:226.;"
L3_058_000G1_scaffold_1578_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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13547..13987
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46969.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Molecular chaperone (small heat shock protein)
L3_058_000G1_scaffold_1578_14
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14080..14760)
DNA (681bp) protein (227aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CN41_9CLOT
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:ERI68711.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
putative peptidoglycan hydrolase
L3_058_000G1_scaffold_1578_15
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14888..15799)
DNA (912bp) protein (304aa)
EDD domain protein, DegV family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P187_9FIRM
EDD domain protein, DegV family {ECO:0000313|EMBL:EDM97779.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
DegV family protein
L3_058_000G1_scaffold_1578_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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15890..16501
DNA (612bp) protein (204aa)
Transcriptional regulator, TetR family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YUM5_9FIRM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EHM42019.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
TetR family transcriptional regulator
L3_058_000G1_scaffold_1578_17
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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16651..17391
DNA (741bp) protein (247aa)
Nitroreductase family protein n=3 Tax=Clostridiales RepID=G9YLK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO31875.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
nitroreductase
L3_058_000G1_scaffold_1578_18
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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17388..17897
DNA (510bp) protein (170aa)
Cob(I)alamin adenosyltransferase (EC:2.5.1.17)
Putative cob(I)yrinic acid a,c-diamide adenosyltransferase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWU6_9FIRM
Putative cob(I)yrinic acid a,c-diamide adenosyltransferase {ECO:0000313|EMBL:EDM99437.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_058_000G1_scaffold_1578_19
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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18135..18707
DNA (573bp) protein (191aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Inorganic pyrophosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase n=2 Tax=Clostridiales RepID=G9YV39_9FIRM
L3_058_000G1_scaffold_1578_20
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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18846..20012
DNA (1167bp) protein (389aa)
UDP-galactopyranose mutase {ECO:0000313|EMBL:EDM99637.1}; EC=5.4.99.9 {ECO:0000313|EMBL:EDM99637.1};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
UDP-galactopyranose mutase (EC:5.4.99.9)
UDP-galactopyranose mutase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NVY0_9FIRM
L3_058_000G1_scaffold_1578_21
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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20018..21046
DNA (1029bp) protein (343aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EDM99638.1}; EC=2.4.-.- {ECO:0000313|EMBL:EDM99638.1};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NVY1_9FIRM
Glycosyltransferases involved in cell wall biogenesis
L3_058_000G1_scaffold_1578_22
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21120..21932)
DNA (813bp) protein (271aa)
phosphoesterase (EC:3.1.-.-)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TTN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC71306.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
L3_058_000G1_scaffold_1578_23
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21929..23377)
DNA (1449bp) protein (483aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Nicotinate phosphoribosyltransferase n=2 Tax=Clostridiales RepID=G9YV28_9FIRM
nicotinate phosphoribosyltransferase
L3_058_000G1_scaffold_1578_24
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23444..23971)
DNA (528bp) protein (176aa)
Isochorismatase family protein {ECO:0000313|EMBL:EDM99640.1}; EC=3.-.-.- {ECO:0000313|EMBL:EDM99640.1};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Isochorismatase family protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NVY3_9FIRM
PncA; nicotinamidase-like amidase
L3_058_000G1_scaffold_1578_25
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23985..24488)
DNA (504bp) protein (168aa)
acetyltransferase (EC:2.3.1.-)
Acetyltransferase, GNAT family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NVY4_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EDM99641.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_058_000G1_scaffold_1578_26
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24494..25282)
DNA (789bp) protein (263aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YV26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO33648.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_058_000G1_scaffold_1578_27
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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25519..26304
DNA (786bp) protein (262aa)
Dipicolinate synthase subunit A n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NPY8_9FIRM
Dipicolinate synthase subunit A {ECO:0000313|EMBL:EDN01913.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
shikimate/quinate 5-dehydrogenase
L3_058_000G1_scaffold_1578_28
unknown

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26336..26455
DNA (120bp) protein (40aa)

This feature has no annotations

L3_058_000G1_scaffold_1578_29
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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26437..27960
DNA (1524bp) protein (508aa)
Resolvase, N-terminal domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NPY6_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EDN01911.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_058_000G1_scaffold_1578_30
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

28518..28877
DNA (360bp) protein (120aa)
Signal peptidase I n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AR99_9FIRM
Signal peptidase I {ECO:0000313|EMBL:CCX45473.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
signal peptidase I
Displaying items 1-30 of 35 in total

View Taxonomy