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L3_058_000G1_scaffold_947

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000G1_scaffold_947_1
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..217
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NRY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01018.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Helix-turn-helix.
L3_058_000G1_scaffold_947_2
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(415..1956)
DNA (1542bp) protein (514aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008788}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CG41_9CLOT
L3_058_000G1_scaffold_947_3
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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2151..2834
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NS19_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01057.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_058_000G1_scaffold_947_4
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2831..3211
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CKC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO25426.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_058_000G1_scaffold_947_5
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3351..3668)
DNA (318bp) protein (106aa)
Thioredoxin n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2Q7_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
trxA; thioredoxin
L3_058_000G1_scaffold_947_6
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3715..4584)
DNA (870bp) protein (290aa)
trxB; thioredoxin reductase (EC:1.8.1.9)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2Q8_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EDM97458.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_058_000G1_scaffold_947_7
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4574..4876)
DNA (303bp) protein (101aa)
Transcriptional regulator, ArsR family n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BBD7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO31020.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ArsR family transcriptional regulator
L3_058_000G1_scaffold_947_8
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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5037..6650
DNA (1614bp) protein (538aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5II44_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI58860.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
conserved hypothetical protein
L3_058_000G1_scaffold_947_9
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6754..7698
DNA (945bp) protein (315aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L-lactate dehydrogenase n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T5X5_ROSHA
L-lactate dehydrogenase
L3_058_000G1_scaffold_947_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8045..8488)
DNA (444bp) protein (148aa)
Acetyltransferase, GNAT family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YTX5_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EHM43283.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
Acetyltransferases
L3_058_000G1_scaffold_947_11
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8495..9025)
DNA (531bp) protein (177aa)
Riboflavin biosynthesis protein RibD C-terminal domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P210_9FIRM
Riboflavin biosynthesis protein RibD C-terminal domain protein {ECO:0000313|EMBL:EDM97680.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Dihydrofolate reductase
L3_058_000G1_scaffold_947_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9155..10063
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBH0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47698.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
helix-turn-helix type 11 domain-containing protein
L3_058_000G1_scaffold_947_13
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10065..10388
DNA (324bp) protein (108aa)
TfoX protein n=3 Tax=Clostridiales RepID=G9YTX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF53675.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_058_000G1_scaffold_947_14
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10391..11017
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBG9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC72840.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_058_000G1_scaffold_947_15
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11026..11325
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W5G0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ40103.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
N-acetyltransferase GCN5
L3_058_000G1_scaffold_947_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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11322..11879
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47696.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_058_000G1_scaffold_947_17
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11884..12279
DNA (396bp) protein (132aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2BYK5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO24198.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_058_000G1_scaffold_947_18
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12352..12861
DNA (510bp) protein (170aa)
DNA-binding helix-turn-helix protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YTW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF53671.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
DNA-binding protein
L3_058_000G1_scaffold_947_19
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12985..13842
DNA (858bp) protein (286aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CKU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF53670.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
transcription activator, effector binding
L3_058_000G1_scaffold_947_20
unknown

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comp(13906..14055)
DNA (150bp) protein (50aa)

This feature has no annotations

L3_058_000G1_scaffold_947_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14121..14531
DNA (411bp) protein (137aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XB77_9FIRM
Peptide deformylase {ECO:0000256|RuleBase:RU003335, ECO:0000256|SAAS:SAAS00013131}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_058_000G1_scaffold_947_22
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14528..14842
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TAC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC70358.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_058_000G1_scaffold_947_23
unknown

Not on your lists

14867..14974
DNA (108bp) protein (36aa)

This feature has no annotations

L3_058_000G1_scaffold_947_24
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14989..15447
DNA (459bp) protein (153aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
Phosphodiesterase family protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6TKX3_9FIRM
putative hydrolase
L3_058_000G1_scaffold_947_25
Oscillibacter sp. CAG:155, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15448..16152
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:155 RepID=R6UHW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC70392.1}; TaxID=1262910 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:155.;"
hypothetical protein
L3_058_000G1_scaffold_947_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16298..16747
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XB67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47595.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_058_000G1_scaffold_947_27
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16975..17502)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9LYG5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS63593.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
acetyltransferase
L3_058_000G1_scaffold_947_28
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18028..18399
DNA (372bp) protein (124aa)
Helix-turn-helix protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YNL2_9FIRM
UPF0122 protein HMPREF9460_01429 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_058_000G1_scaffold_947_29
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


18403..19755
DNA (1353bp) protein (451aa)
Signal recognition particle protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YNL3_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
ffh; signal recognition particle protein
L3_058_000G1_scaffold_947_30
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19824..20063
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=3 Tax=Clostridiales RepID=G9YNL4_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
rpsP; 30S ribosomal protein S16
Displaying items 1-30 of 62 in total

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