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L3_058_000M1_scaffold_28

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Displaying items 1-30 of 138 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_28_1
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(681..3104)
DNA (2424bp) protein (808aa)
Alpha-L-rhamnosidase N-terminal domain protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WXI7_9PORP
Alpha-L-rhamnosidase N-terminal domain protein {ECO:0000313|EMBL:CDD11659.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycoside hydrolase
L3_058_000M1_scaffold_28_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3207..3995)
DNA (789bp) protein (263aa)
4Fe-4S binding domain protein n=2 Tax=Parabacteroides merdae RepID=A7AC93_9PORP
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDN87876.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ferredoxin iron-sulfur protein
L3_058_000M1_scaffold_28_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4001..4510)
DNA (510bp) protein (170aa)
Redoxin family protein n=2 Tax=Parabacteroides merdae RepID=A7AC92_9PORP
Redoxin family protein {ECO:0000313|EMBL:EDN87875.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_058_000M1_scaffold_28_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4515..5099)
DNA (585bp) protein (195aa)
indolepyruvate oxidoreductase subunit beta (EC:1.2.7.8)
Indolepyruvate oxidoreductase subunit beta n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WQM8_9PORP
Indolepyruvate oxidoreductase subunit beta {ECO:0000313|EMBL:CDD11675.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_058_000M1_scaffold_28_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5096..6694)
DNA (1599bp) protein (533aa)
Indolepyruvate oxidoreductase subunit IorA {ECO:0000256|PIRNR:PIRNR006439}; Short=IOR {ECO:0000256|PIRNR:PIRNR006439};; EC=1.2.7.8 {ECO:0000256|PIRNR:PIRNR006439};; Indolepyruvate ferredoxin oxidoreductase subunit alpha {ECO:0000256|PIRNR:PIRNR006439}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Indolepyruvate ferredoxin oxidoreductase, alpha subunit n=3 Tax=Parabacteroides RepID=K6BLC8_9PORP
indolepyruvate oxidoreductase subunit IorA
L3_058_000M1_scaffold_28_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6913..7992)
DNA (1080bp) protein (360aa)
YceG family protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WXK7_9PORP
YceG family protein {ECO:0000313|EMBL:CDD11679.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_058_000M1_scaffold_28_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8633..9718)
DNA (1086bp) protein (362aa)
Bacterial capsule synthesis protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XZN2_9PORP
Bacterial capsule synthesis protein {ECO:0000313|EMBL:CDD11682.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
capsular biosynthesis protein
L3_058_000M1_scaffold_28_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9715..10611)
DNA (897bp) protein (299aa)
Bifunctional protein FolD n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WXL1_9PORP
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase
L3_058_000M1_scaffold_28_9
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(10635..11960)
DNA (1326bp) protein (442aa)
Signal recognition particle protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WQN7_9PORP
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
signal recognition protein
L3_058_000M1_scaffold_28_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12060..13382)
DNA (1323bp) protein (441aa)
MATE efflux family protein n=2 Tax=Parabacteroides merdae RepID=A7AC81_9PORP
MATE efflux family protein {ECO:0000313|EMBL:EDN87864.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
antiporter membrane protein
L3_058_000M1_scaffold_28_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13466..13837)
DNA (372bp) protein (124aa)
Aspartate 1-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097809}; EC=4.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00446, ECO:0000256|SAAS:SAAS00097718};; Aspartate alpha-decarboxylase {ECO:0000256|HAMAP-Rule:MF_00446}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
aspartate alpha-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase n=7 Tax=Parabacteroides RepID=A7AC80_9PORP
L3_058_000M1_scaffold_28_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13953..14792)
DNA (840bp) protein (280aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Pantothenate synthetase n=2 Tax=Parabacteroides merdae RepID=A7AC79_9PORP
panC; pantoate--beta-alanine ligase
L3_058_000M1_scaffold_28_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14841..15710
DNA (870bp) protein (290aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6BLB9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD11689.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glycosyl transferase family protein
L3_058_000M1_scaffold_28_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15721..17097
DNA (1377bp) protein (459aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AC58_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87841.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
lipoprotein
L3_058_000M1_scaffold_28_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17184..18491)
DNA (1308bp) protein (436aa)
Glycosyl hydrolase, family 57 n=3 Tax=Parabacteroides RepID=A7AC57_9PORP
Glycosyl hydrolase family 57 {ECO:0000313|EMBL:CDD14925.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
alpha-amylase
L3_058_000M1_scaffold_28_16
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18508..19794)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6AZC4_9PORP
Glycosyltransferase group 1 family protein {ECO:0000313|EMBL:CDD14924.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
4-alpha-glucanotransferase
L3_058_000M1_scaffold_28_17
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19791..21731)
DNA (1941bp) protein (647aa)
Putative glycogen debranching enzyme archaeal type n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WUB5_9PORP
Putative glycogen debranching enzyme archaeal type {ECO:0000313|EMBL:CDD14923.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_058_000M1_scaffold_28_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22053..24143
DNA (2091bp) protein (697aa)
Peptidase family M3 n=2 Tax=Parabacteroides merdae RepID=A7AC53_9PORP
Peptidase family M3 {ECO:0000313|EMBL:EDN87836.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
peptidyl-dipeptidase
L3_058_000M1_scaffold_28_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24282..24716
DNA (435bp) protein (145aa)
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XF15_9PORP
Cytidine and deoxycytidylate deaminase zinc-binding region {ECO:0000313|EMBL:CDD14921.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
deoxycytidylate deaminase
L3_058_000M1_scaffold_28_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24728..26461
DNA (1734bp) protein (578aa)
Peptidase, S41 family n=2 Tax=Parabacteroides merdae RepID=A7AC51_9PORP
Peptidase, S41 family {ECO:0000313|EMBL:EDN87834.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
carboxy-terminal processing protease
L3_058_000M1_scaffold_28_21
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26406..26921
DNA (516bp) protein (172aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Parabacteroides merdae RepID=K6AZB9_9PORP
5-formyltetrahydrofolate cyclo-ligase
L3_058_000M1_scaffold_28_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26923..27318)
DNA (396bp) protein (132aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AC49_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87832.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_058_000M1_scaffold_28_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27334..27627)
DNA (294bp) protein (98aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AC48_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87831.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_058_000M1_scaffold_28_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27624..28727)
DNA (1104bp) protein (368aa)
DNA replication and repair protein RecF n=3 Tax=Parabacteroides RepID=A7AC47_9PORP
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
DNA replication and repair protein
L3_058_000M1_scaffold_28_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28863..29549
DNA (687bp) protein (229aa)
Tetratricopeptide repeat protein n=4 Tax=Parabacteroides RepID=A7AC46_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN10327.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_058_000M1_scaffold_28_26
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29581..30108
DNA (528bp) protein (176aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
6,7-dimethyl-8-ribityllumazine synthase n=3 Tax=Parabacteroides RepID=A7AC45_9PORP
ribH; 6,7-dimethyl-8-ribityllumazine synthase
L3_058_000M1_scaffold_28_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30628..30951
DNA (324bp) protein (108aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7AC42_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87825.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_058_000M1_scaffold_28_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30948..31151)
DNA (204bp) protein (68aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7AC41_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87824.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_058_000M1_scaffold_28_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31580..31891)
DNA (312bp) protein (104aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AC40_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN10323.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_058_000M1_scaffold_28_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32068..32439)
DNA (372bp) protein (124aa)
Preprotein translocase, SecG subunit n=3 Tax=Parabacteroides RepID=A7AC39_9PORP
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:EDN87822.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
secG; preprotein translocase subunit SecG
Displaying items 1-30 of 138 in total

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