ggKbase home page

L3_058_000M1_scaffold_78

Search features with annotation key words

Displaying items 1-30 of 92 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_78_1
unknown

Not on your lists

comp(2..61)
DNA (60bp) protein (20aa)

This feature has no annotations

L3_058_000M1_scaffold_78_2
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

217..720
DNA (504bp) protein (168aa)
Uncharacterized protein n=8 Tax=Bacteroidales RepID=A6L9F7_PARD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFK61351.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
L3_058_000M1_scaffold_78_3
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

725..1393
DNA (669bp) protein (223aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=A6L9F6_PARD8
hypothetical protein
Alanine racemase, N-terminal domain protein {ECO:0000313|EMBL:KDS65432.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_058_000M1_scaffold_78_4
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1423..2400
DNA (978bp) protein (326aa)
dihydroorotate dehydrogenase 2 (EC:1.3.98.1)
Dihydroorotate dehydrogenase 2 {ECO:0000313|EMBL:EFK61353.1}; EC=1.3.98.1 {ECO:0000313|EMBL:EFK61353.1};; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
Dihydroorotate dehydrogenase family protein n=9 Tax=Bacteroidales RepID=A6L9F5_PARD8
L3_058_000M1_scaffold_78_5
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2610..2975
DNA (366bp) protein (122aa)
Transcriptional regulator, MarR family n=9 Tax=Bacteroidales RepID=C7XA94_9PORP
transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EEU51171.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
L3_058_000M1_scaffold_78_6
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3043..5511
DNA (2469bp) protein (823aa)
Pyridine nucleotide-disulphide oxidoreductase n=2 Tax=Parabacteroides RepID=A6L9F3_PARD8
pyridine nucleotide-disulfide oxidoreductase
Pyridine nucleotide-disulfide oxidoreductase family protein {ECO:0000313|EMBL:KDS65447.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_058_000M1_scaffold_78_7
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5581..5838)
DNA (258bp) protein (86aa)
Uncharacterized protein n=4 Tax=Bacteroidales RepID=A6L9F2_PARD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR42316.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
L3_058_000M1_scaffold_78_8
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5854..7128)
DNA (1275bp) protein (425aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase {ECO:0000313|EMBL:KDS65442.1}; EC=6.1.1.11 {ECO:0000313|EMBL:KDS65442.1};; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
Seryl-tRNA synthetase n=2 Tax=Bacteroidales RepID=A6L9F1_PARD8
L3_058_000M1_scaffold_78_9
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7176..7715)
DNA (540bp) protein (180aa)
NlpC/P60 family protein n=7 Tax=Bacteroidales RepID=C7XA89_9PORP
lipoprotein
NlpC/P60 family protein {ECO:0000313|EMBL:KDS65448.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_058_000M1_scaffold_78_10
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7845..8555)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Parabacteroides distasonis CL03T12C09 RepID=K6AIB9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN23320.1}; TaxID=999416 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL03T12C09.;"
two-component system response regulator
L3_058_000M1_scaffold_78_11
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8552..9574)
DNA (1023bp) protein (341aa)
Histidine kinase superfamily n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7IWH9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KEJ86029.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
two-component system sensor histidine kinase
L3_058_000M1_scaffold_78_12
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9674..11668)
DNA (1995bp) protein (665aa)
Uncharacterized protein n=1 Tax=Parabacteroides distasonis CL03T12C09 RepID=K6B5L7_9PORP
Putative alpha-glucosidase {ECO:0000313|EMBL:KDS65439.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
glycoside hydrolase
L3_058_000M1_scaffold_78_13
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11751..13490
DNA (1740bp) protein (580aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. D25 RepID=K6BG68_9PORP
GDSL-like Lipase/Acylhydrolase family protein {ECO:0000313|EMBL:KDS65425.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
acetylhydrolase
L3_058_000M1_scaffold_78_14
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13503..14039)
DNA (537bp) protein (179aa)
Competence-damage inducible protein n=6 Tax=Bacteroidales RepID=A6L9E5_PARD8
competence-damage inducible protein
Competence-damage inducible protein {ECO:0000313|EMBL:ABR42309.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
L3_058_000M1_scaffold_78_15
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(14104..15123)
DNA (1020bp) protein (340aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
tRNA N6-adenosine threonylcarbamoyltransferase n=3 Tax=Bacteroidales RepID=A6L9E4_PARD8
DNA-binding/iron metalloprotein/AP endonuclease
L3_058_000M1_scaffold_78_16
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15263..19726
DNA (4464bp) protein (1488aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. D25 RepID=K6ATY6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KDS65408.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
hypothetical protein
L3_058_000M1_scaffold_78_17
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19683..20615)
DNA (933bp) protein (311aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
tRNA-dihydrouridine synthase n=3 Tax=Parabacteroides RepID=A6L9E2_PARD8
dihydrouridine synthase
L3_058_000M1_scaffold_78_18
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20617..21282)
DNA (666bp) protein (222aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
Octanoyltransferase n=6 Tax=Bacteroidales RepID=LIPB_PARD8
lipoate-protein ligase B
L3_058_000M1_scaffold_78_19
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21228..22028)
DNA (801bp) protein (267aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
Glycosyltransferase family 51, candidate monofunctional monofunctional peptidoglycan glycosyltransferase n=1 Tax=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) RepID=A6L9E0_PARD8
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase
L3_058_000M1_scaffold_78_20
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22169..23827
DNA (1659bp) protein (553aa)
AMP-binding enzyme n=9 Tax=Bacteroidales RepID=C7XA78_9PORP
long-chain-fatty-acid--CoA ligase
AMP-binding enzyme family protein {ECO:0000313|EMBL:EFI07287.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
L3_058_000M1_scaffold_78_21
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23878..24387)
DNA (510bp) protein (170aa)
RNA polymerase ECF-type sigma factor n=8 Tax=Bacteroidales RepID=A6L9D8_PARD8
RNA polymerase ECF-type sigma factor
Sigma-70 region 2 {ECO:0000313|EMBL:EFK61369.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
L3_058_000M1_scaffold_78_22
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24653..26032
DNA (1380bp) protein (460aa)
Uncharacterized protein n=5 Tax=Bacteroidales RepID=A6L9D7_PARD8
membrane-bound serine protease
Serine protease, ClpP class {ECO:0000313|EMBL:EFI07285.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
L3_058_000M1_scaffold_78_23
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26039..26674)
DNA (636bp) protein (212aa)
Uncharacterized protein n=7 Tax=Bacteroidales RepID=A6L9D6_PARD8
hypothetical protein
Divergent AAA domain protein {ECO:0000313|EMBL:KDS65452.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_058_000M1_scaffold_78_24
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26745..29015
DNA (2271bp) protein (757aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6AI12_9PORP
Putative Na+/H+ antiporter {ECO:0000313|EMBL:ABR42299.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
Na+/H+ antiporter
L3_058_000M1_scaffold_78_25
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29030..29785
DNA (756bp) protein (252aa)
3-deoxy-manno-octulosonate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008}; EC=2.7.7.38 {ECO:0000256|HAMAP-Rule:MF_00057, ECO:0000256|SAAS:SAAS00089008};; CMP-2-keto-3-deoxyoctulosonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00057}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
3-deoxy-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
3-deoxy-manno-octulosonate cytidylyltransferase n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7IWG5_9BACE
L3_058_000M1_scaffold_78_26
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29802..30758)
DNA (957bp) protein (319aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=A6L9D3_PARD8
Putative membrane protein {ECO:0000313|EMBL:KDS65441.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
hypothetical protein
L3_058_000M1_scaffold_78_27
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30770..31525)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Parabacteroides distasonis CL03T12C09 RepID=K6A5S0_9PORP
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:KDS65441.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_058_000M1_scaffold_78_28
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31774..33675)
DNA (1902bp) protein (634aa)
Membrane protein insertase YidC n=2 Tax=Parabacteroides distasonis RepID=YIDC_PARD8
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
inner membrane protein translocase component YidC
L3_058_000M1_scaffold_78_29
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33686..35293)
DNA (1608bp) protein (536aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase n=6 Tax=Bacteroidales RepID=C7XA70_9PORP
L3_058_000M1_scaffold_78_30
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35713..37254
DNA (1542bp) protein (514aa)
Putative uncharacterized protein n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7IWG1_9BACE
Putative uncharacterized protein {ECO:0000313|EMBL:EFI07278.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
hypothetical protein
Displaying items 1-30 of 92 in total

View Taxonomy