ggKbase home page

L3_058_000M1_scaffold_99

Search features with annotation key words

Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_99_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

230..1180
DNA (951bp) protein (317aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=K6ABT1_9PORP
Bacteroidetes-specific putative membrane protein {ECO:0000313|EMBL:EDN88406.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_058_000M1_scaffold_99_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1184..2611
DNA (1428bp) protein (476aa)
Gliding motility-associated lipoprotein GldK n=5 Tax=Parabacteroides RepID=K5ZBV5_9PORP
Putative gliding motility-associated lipoprotein GldK {ECO:0000313|EMBL:EDN88407.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_058_000M1_scaffold_99_3
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2700..3731
DNA (1032bp) protein (344aa)
Gliding motility-associated protein GldL n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6X6V0_9PORP
Gliding motility-associated protein GldL {ECO:0000313|EMBL:CDD14854.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_058_000M1_scaffold_99_4
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3738..5306
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6WZW4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14855.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_058_000M1_scaffold_99_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5354..6445
DNA (1092bp) protein (364aa)
Gliding motility-associated protein GldN n=3 Tax=Parabacteroides RepID=A7A9V3_9PORP
Gliding motility-associated protein GldN {ECO:0000313|EMBL:EDN88410.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_058_000M1_scaffold_99_6
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6545..9289)
DNA (2745bp) protein (915aa)
Transglutaminase-like protein n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6Y8X4_9PORP
Transglutaminase-like protein {ECO:0000313|EMBL:CDD14857.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_058_000M1_scaffold_99_7
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9351..10868
DNA (1518bp) protein (506aa)
TrkA C-terminal domain protein n=3 Tax=Parabacteroides RepID=A7A9V5_9PORP
TrkA C-terminal domain protein {ECO:0000313|EMBL:CDD14858.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
cvrA, nhaP2, ycgO; potassium/proton antiporter
L3_058_000M1_scaffold_99_8
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10880..11518)
DNA (639bp) protein (213aa)
WbqC-like protein n=3 Tax=Parabacteroides merdae RepID=A7A9V6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN13145.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_058_000M1_scaffold_99_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11519..12472)
DNA (954bp) protein (318aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Signal peptidase I n=3 Tax=Parabacteroides RepID=A7A9V7_9PORP
signal peptidase I
L3_058_000M1_scaffold_99_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12420..13817)
DNA (1398bp) protein (466aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Signal peptidase I n=4 Tax=Parabacteroides RepID=A7A9V8_9PORP
signal peptidase I
L3_058_000M1_scaffold_99_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13834..14550)
DNA (717bp) protein (239aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018107}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018107};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
4-hydroxy-tetrahydrodipicolinate reductase n=3 Tax=Parabacteroides RepID=A7A9V9_9PORP
dihydrodipicolinate reductase
L3_058_000M1_scaffold_99_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14662..15945
DNA (1284bp) protein (428aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7A9W0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88417.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_058_000M1_scaffold_99_13
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16044..17960
DNA (1917bp) protein (639aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7A9W1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88418.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_058_000M1_scaffold_99_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17899..18786
DNA (888bp) protein (296aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B2J8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14865.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L3_058_000M1_scaffold_99_15
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18790..19842)
DNA (1053bp) protein (351aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=3 Tax=Parabacteroides RepID=A7A9W3_9PORP
two-component system sensor histidine kinase
L3_058_000M1_scaffold_99_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19855..21189)
DNA (1335bp) protein (445aa)
Sigma-54 interaction domain protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7A9W4_9PORP
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EDN88422.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
two-component system response regulator
L3_058_000M1_scaffold_99_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21470..22024
DNA (555bp) protein (185aa)
RNA polymerase sigma-70 factor n=4 Tax=Parabacteroides RepID=A7A9W6_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EDN88423.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
RNA polymerase ECF-type sigma factor
L3_058_000M1_scaffold_99_18
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22091..23083
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6C1W7_9PORP
Sigma factor regulatory protein FecR/PupR family {ECO:0000313|EMBL:CDD14869.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
anti-sigma factor
L3_058_000M1_scaffold_99_19
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23241..26579
DNA (3339bp) protein (1113aa)
TonB-linked outer membrane protein, SusC/RagA family n=3 Tax=Parabacteroides RepID=A7A9W8_9PORP
TonB-linked outer membrane protein SusC/RagA family {ECO:0000313|EMBL:CDD14870.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
TonB-dependent receptor plug
L3_058_000M1_scaffold_99_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26592..28295
DNA (1704bp) protein (568aa)
SusD family protein n=2 Tax=Parabacteroides merdae RepID=A7A9W9_9PORP
SusD family protein {ECO:0000313|EMBL:EDN88426.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
RagB/SusD domain protein
L3_058_000M1_scaffold_99_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28383..30917
DNA (2535bp) protein (845aa)
alpha-L-fucosidase (EC:3.2.1.51)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6BEL2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88427.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L3_058_000M1_scaffold_99_22
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30928..32370
DNA (1443bp) protein (481aa)
sulfatase (EC:3.1.6.-)
Arylsulfatase n=3 Tax=Parabacteroides RepID=A7A9X1_9PORP
Arylsulfatase {ECO:0000313|EMBL:CDD14873.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_058_000M1_scaffold_99_23
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32451..33494
DNA (1044bp) protein (348aa)
Kinase, PfkB family n=4 Tax=Parabacteroides RepID=A7A9X2_9PORP
Kinase PfkB family {ECO:0000313|EMBL:CDD14874.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
gluconate kinase
L3_058_000M1_scaffold_99_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33542..34210
DNA (669bp) protein (223aa)
keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase (EC:4.1.2.14 4.1.3.16)
KDPG and KHG aldolase n=4 Tax=Parabacteroides RepID=A7A9X3_9PORP
KDPG and KHG aldolase {ECO:0000313|EMBL:CDD14875.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L3_058_000M1_scaffold_99_25
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34293..35696
DNA (1404bp) protein (468aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
glucuronate isomerase (EC:5.3.1.12)
Uronate isomerase n=1 Tax=Parabacteroides merdae CAG:48 RepID=R6XEW3_9PORP
L3_058_000M1_scaffold_99_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35759..39352)
DNA (3594bp) protein (1198aa)
Tetratricopeptide repeat protein n=2 Tax=Parabacteroides merdae RepID=A7A9X5_9PORP
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EDN88432.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_058_000M1_scaffold_99_27
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39361..40164)
DNA (804bp) protein (268aa)
ABC 3 transport family protein n=4 Tax=Parabacteroides RepID=A7A9X6_9PORP
ABC 3 transport family protein {ECO:0000313|EMBL:CDD14878.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
zinc ABC transporter permease
L3_058_000M1_scaffold_99_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(40298..40720)
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7A9X8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN88435.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L3_058_000M1_scaffold_99_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(40790..42022)
DNA (1233bp) protein (411aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
3-phosphoshikimate 1-carboxyvinyltransferase n=2 Tax=Parabacteroides merdae RepID=A7A9X9_9PORP
3-phosphoshikimate 1-carboxyvinyltransferase
L3_058_000M1_scaffold_99_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(42122..42841)
DNA (720bp) protein (240aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6BF51_9PORP
Glycosyl hydrolase, family 88 {ECO:0000313|EMBL:EDN88437.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glycosyl hydrolase family protein
Displaying items 1-30 of 108 in total

View Taxonomy