ggKbase home page

L3_058_000M1_scaffold_102

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_102_1
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3..551
DNA (549bp) protein (183aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K5ZI18_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN26527.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
hypothetical protein
L3_058_000M1_scaffold_102_2
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(645..1226)
DNA (582bp) protein (194aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A6LFB0_PARD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR44374.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
L3_058_000M1_scaffold_102_3
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1243..2766)
DNA (1524bp) protein (508aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
phosphoglyceromutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=2 Tax=Parabacteroides RepID=K5ZS03_9PORP
L3_058_000M1_scaffold_102_4
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2873..3571
DNA (699bp) protein (233aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=C7XDT2_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN26524.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
zinc protease
L3_058_000M1_scaffold_102_5
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3610..6324)
DNA (2715bp) protein (905aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K5YW57_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDB48248.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
vitamin B12 receptor
L3_058_000M1_scaffold_102_6
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6425..13843)
DNA (7419bp) protein (2473aa)
Uncharacterized protein n=2 Tax=root RepID=C7XDT4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEU50037.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
hypothetical protein
L3_058_000M1_scaffold_102_7
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13894..14484)
DNA (591bp) protein (197aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
Holliday junction ATP-dependent DNA helicase RuvA n=2 Tax=Parabacteroides RepID=K6A4M8_9PORP
ruvA; Holliday junction DNA helicase RuvA
L3_058_000M1_scaffold_102_8
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14549..15436)
DNA (888bp) protein (296aa)
Gluconolactonase n=1 Tax=Bacteroides sp. 3_1_19 RepID=D7IUL9_9BACE
gluconolactonase
SMP-30/Gluconolaconase/LRE-like region {ECO:0000313|EMBL:EEU50039.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
L3_058_000M1_scaffold_102_9
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15448..16902)
DNA (1455bp) protein (485aa)
Potassium uptake protein TrkH n=5 Tax=Bacteroidales RepID=A6LFB7_PARD8
potassium uptake protein TrkH
TrkH family potassium uptake protein {ECO:0000313|EMBL:EKN26519.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
L3_058_000M1_scaffold_102_10
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16912..18249)
DNA (1338bp) protein (446aa)
Trk system K+ uptake protein TrkA n=9 Tax=Bacteroidales RepID=A6LFB8_PARD8
trkA; potassium transporter peripheral membrane protein
TrkA N-terminal domain protein {ECO:0000313|EMBL:EEU50041.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
L3_058_000M1_scaffold_102_11
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18270..20168)
DNA (1899bp) protein (633aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00021618}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Parabacteroides RepID=K5ZI07_9PORP
L3_058_000M1_scaffold_102_12
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20562..20669
DNA (108bp) protein (36aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6IGA0_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDB48255.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
L3_058_000M1_scaffold_102_13
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20787..21185)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. D25 RepID=K6ASG1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN26515.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
hypothetical protein
L3_058_000M1_scaffold_102_14
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21241..22977)
DNA (1737bp) protein (579aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. D25 RepID=K6AES6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN26514.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
hypothetical protein
L3_058_000M1_scaffold_102_15
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23204..23989)
DNA (786bp) protein (262aa)
Uncharacterized protein n=2 Tax=Bacteroidales RepID=K6BEM5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN26513.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
inositol-1-monophosphatase
L3_058_000M1_scaffold_102_16
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24167..24841
DNA (675bp) protein (225aa)
TonB-dependent receptor plug domain-containing protein n=2 Tax=Bacteroidales RepID=D7IUL2_9BACE
TonB-dependent receptor plug domain-containing protein {ECO:0000313|EMBL:CDB48259.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
outer membrane protein
L3_058_000M1_scaffold_102_17
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24871..29487
DNA (4617bp) protein (1539aa)
Uncharacterized protein n=2 Tax=Bacteroidales RepID=A6LFC4_PARD8
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EFI07589.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
L3_058_000M1_scaffold_102_18
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29484..31940
DNA (2457bp) protein (819aa)
Uncharacterized protein n=3 Tax=Bacteroidales RepID=A6LFC5_PARD8
hypothetical protein
Lipoprotein {ECO:0000313|EMBL:EFI07588.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
L3_058_000M1_scaffold_102_19
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32070..33341
DNA (1272bp) protein (424aa)
Uncharacterized protein n=2 Tax=Bacteroidales RepID=K5ZRZ0_9PORP
Putative uncharacterized protein {ECO:0000313|EMBL:EFI07587.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
hypothetical protein
L3_058_000M1_scaffold_102_20
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33447..34343)
DNA (897bp) protein (299aa)
Arginase {ECO:0000256|RuleBase:RU361159}; EC=3.5.3.1 {ECO:0000256|RuleBase:RU361159};; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
Arginase n=4 Tax=Bacteroidales RepID=A6LFC7_PARD8
arginase
L3_058_000M1_scaffold_102_21
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34347..35555)
DNA (1209bp) protein (403aa)
Acetylornithine aminotransferase, putative n=3 Tax=Parabacteroides RepID=A6LFC8_PARD8
acetylornithine aminotransferase
Ornithine-oxo-acid transaminase {ECO:0000313|EMBL:EKN26507.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
L3_058_000M1_scaffold_102_22
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35776..36939)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A6LFC9_PARD8
hypothetical protein
Acyltransferase family protein {ECO:0000313|EMBL:KDS73823.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_058_000M1_scaffold_102_23
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36946..37938)
DNA (993bp) protein (331aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
ddl; D-alanyl-alanine synthetase A (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Parabacteroides sp. D25 RepID=K6ASF2_9PORP
L3_058_000M1_scaffold_102_24
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(37941..39020)
DNA (1080bp) protein (360aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
Pseudouridine synthase n=1 Tax=Parabacteroides sp. CAG:2 RepID=R6IFM3_9PORP
ribosomal large subunit pseudouridine synthase D
L3_058_000M1_scaffold_102_25
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(39025..39651)
DNA (627bp) protein (209aa)
Uncharacterized protein n=8 Tax=Bacteroidales RepID=A6LFD2_PARD8
hypothetical protein
PASTA domain protein {ECO:0000313|EMBL:KDS73826.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_058_000M1_scaffold_102_26
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(39802..39954)
DNA (153bp) protein (51aa)
50S ribosomal protein L34 n=18 Tax=Bacteroidales RepID=A7AE63_9PORP
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|RuleBase:RU000566}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
50S ribosomal protein L34
L3_058_000M1_scaffold_102_27
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(40275..42173)
DNA (1899bp) protein (633aa)
Uncharacterized protein n=2 Tax=Bacteroidales RepID=K6ARU1_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KEJ84547.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
hypothetical protein
L3_058_000M1_scaffold_102_28
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(42207..44264)
DNA (2058bp) protein (686aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. D25 RepID=K6ASE5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KEJ84546.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
lipoprotein
L3_058_000M1_scaffold_102_29
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(44277..45398)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Parabacteroides sp. D25 RepID=K6AER4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN26499.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
hypothetical protein
L3_058_000M1_scaffold_102_30
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(46210..47175)
DNA (966bp) protein (322aa)
TPR-domain containing protein n=2 Tax=Parabacteroides RepID=A6LFD6_PARD8
SHNi-TPR family protein {ECO:0000313|EMBL:KDS73832.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
hypothetical protein
Displaying items 1-30 of 84 in total

View Taxonomy