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L3_058_000M1_scaffold_160

Search features with annotation key words

Displaying items 1-30 of 88 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_160_1
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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100..357
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L519_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14714.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_058_000M1_scaffold_160_2
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

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357..557
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003639376
hypothetical protein
Tax=GWF2_Clostridiales_38_85_curated
L3_058_000M1_scaffold_160_3
Firmicutes bacterium CAG:240, Firmicutes, Bacteria

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579..1508
DNA (930bp) protein (310aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Firmicutes bacterium CAG:240 RepID=R6J337_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CDB44697.1}; TaxID=1263013 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:240.;"
N-acetylmuramoyl-L-alanine amidase
L3_058_000M1_scaffold_160_4
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1558..2322
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:964 RepID=R6U1Y8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC79698.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
hypothetical protein
L3_058_000M1_scaffold_160_5
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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2393..2659
DNA (267bp) protein (89aa)
DNA-binding helix-turn-helix protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSR2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF39807.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
putative transcriptional regulator
L3_058_000M1_scaffold_160_6
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2760..3419)
DNA (660bp) protein (220aa)
Penicillin V acylase and related amidases n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7A3_9FIRM
Penicillin V acylase and related amidases
Penicillin V acylase and related amidases {ECO:0000313|EMBL:CBL15498.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_058_000M1_scaffold_160_7
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3589..4650)
DNA (1062bp) protein (354aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase {ECO:0000313|EMBL:CBL15497.1}; EC=6.1.1.2 {ECO:0000313|EMBL:CBL15497.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Tryptophanyl-tRNA synthetase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7A2_9FIRM
L3_058_000M1_scaffold_160_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4892..5578
DNA (687bp) protein (229aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUH9_9FIRM
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:CCX83823.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
1-acyl-sn-glycerol-3-phosphate acyltransferase
L3_058_000M1_scaffold_160_9
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5619..5861
DNA (243bp) protein (81aa)
Acyl-carrier protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUA7_9FIRM
Acyl-carrier protein {ECO:0000313|EMBL:CCX83825.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_058_000M1_scaffold_160_10
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5863..8061
DNA (2199bp) protein (733aa)
3-oxoacyl-(acyl-carrier-protein) synthase (EC:2.3.1.179)
3-oxoacyl-(Acyl-carrier-protein) synthase {ECO:0000313|EMBL:CBL15495.1}; EC=2.3.1.179 {ECO:0000313|EMBL:CBL15495.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
3-oxoacyl-(Acyl-carrier-protein) synthase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L7A0_9FIRM
L3_058_000M1_scaffold_160_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8077..8811
DNA (735bp) protein (245aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.100)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) {ECO:0000313|EMBL:CBL15494.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CBL15494.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L799_9FIRM
L3_058_000M1_scaffold_160_12
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8808..9263
DNA (456bp) protein (152aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC:4.2.1.-)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase {ECO:0000313|EMBL:CBL15493.1}; EC=4.2.1.- {ECO:0000313|EMBL:CBL15493.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
3-hydroxyacyl-[acyl-carrier-protein] dehydratase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L798_9FIRM
L3_058_000M1_scaffold_160_13
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9266..9970
DNA (705bp) protein (235aa)
Flavodoxin-like fold n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L797_9FIRM
Flavodoxin-like fold.
Flavodoxin-like fold {ECO:0000313|EMBL:CBL15492.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_058_000M1_scaffold_160_14
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9971..10552)
DNA (582bp) protein (194aa)
Transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E4Y8_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CCX83837.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Transcriptional regulator
L3_058_000M1_scaffold_160_15
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10617..11456
DNA (840bp) protein (280aa)
Predicted esterase of the alpha-beta hydrolase superfamily n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L795_9FIRM
Predicted esterase of the alpha-beta hydrolase superfamily
Predicted esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:CBL15490.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_058_000M1_scaffold_160_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11652..12191
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DY37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83839.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_058_000M1_scaffold_160_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12276..12791
DNA (516bp) protein (172aa)
Transcriptional regulator MerR family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUC4_9FIRM
Transcriptional regulator MerR family {ECO:0000313|EMBL:CCX83840.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
transcriptional regulator, MerR family
L3_058_000M1_scaffold_160_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12858..13049)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E6T0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83841.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_058_000M1_scaffold_160_19

Not on your lists

13153..13563
DNA (411bp) protein (137aa)
Formylmethionine deformylase {ECO:0000313|EMBL:EKC60742.1}; EC=3.5.1.88 {ECO:0000313|EMBL:EKC60742.1};; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Peptide deformylase n=2 Tax=root RepID=R5DY41_9FIRM
N-formylmethionyl-tRNA deformylase
L3_058_000M1_scaffold_160_20
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13831..14292
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUC9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83845.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_058_000M1_scaffold_160_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14307..14822
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E500_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83847.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_058_000M1_scaffold_160_22
unknown

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comp(14845..14940)
DNA (96bp) protein (32aa)

This feature has no annotations

L3_058_000M1_scaffold_160_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15028..15282
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DUL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83858.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L3_058_000M1_scaffold_160_24
RBG_19FT_COMBO_Actinobacteria_36_27_curated, Actinobacteria, Bacteria

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comp(15486..16712)
DNA (1227bp) protein (409aa)
aspartate aminotransferase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2BA59
aspartate/tyrosine/aromatic aminotransferase
Tax=RBG_19FT_COMBO_Actinobacteria_36_27_curated
L3_058_000M1_scaffold_160_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17214..19823)
DNA (2610bp) protein (870aa)
Small GTP-binding protein domain n=2 Tax=root RepID=R5DUF0_9FIRM
Small GTP-binding protein domain {ECO:0000313|EMBL:CCX83865.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
small GTP-binding protein domain
L3_058_000M1_scaffold_160_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19858..20334)
DNA (477bp) protein (159aa)
Acetyltransferases n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E6V5_9FIRM
Acetyltransferases {ECO:0000313|EMBL:CCX83866.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Acetyltransferases
L3_058_000M1_scaffold_160_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20728..21270
DNA (543bp) protein (181aa)
UPF0340 protein BN462_01279 n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E522_9FIRM
UPF0340 protein BN462_01279 {ECO:0000256|HAMAP-Rule:MF_00800}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
conserved hypothetical protein TIGR01440
L3_058_000M1_scaffold_160_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21453..24167
DNA (2715bp) protein (905aa)
Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DY67_9FIRM
Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC {ECO:0000313|EMBL:CCX83869.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC
L3_058_000M1_scaffold_160_29
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24470..25573
DNA (1104bp) protein (368aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E528_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CCX83872.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L3_058_000M1_scaffold_160_30
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25635..26201)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DY73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83874.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
Displaying items 1-30 of 88 in total

View Taxonomy