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L3_058_000M1_scaffold_228

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Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_228_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..521
DNA (519bp) protein (173aa)
AP endonuclease, family 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PS30_9FIRM
AP endonuclease, family 2 {ECO:0000313|EMBL:EFB74558.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Xylose isomerase-like TIM barrel.
L3_058_000M1_scaffold_228_2
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

558..1427
DNA (870bp) protein (290aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
Shikimate dehydrogenase n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AKE2_9FIRM
aroD3; shikimate 5-dehydrogenase
L3_058_000M1_scaffold_228_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1457..3385
DNA (1929bp) protein (643aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PS32_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EFB74560.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
oxidoreductase
L3_058_000M1_scaffold_228_4
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3463..4686
DNA (1224bp) protein (408aa)
Arabinose efflux permease n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MWT0_9CLOT
arabinose efflux permease
Arabinose efflux permease {ECO:0000313|EMBL:AGF59036.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_058_000M1_scaffold_228_5
Megasphaera sp. BV3C16-1, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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4790..6121
DNA (1332bp) protein (444aa)
Transporter, major facilitator family protein n=1 Tax=Megasphaera sp. BV3C16-1 RepID=U7UHR0_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:ERT57988.1}; TaxID=1111454 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. BV3C16-1.;"
d-galactonate transporter
L3_058_000M1_scaffold_228_6
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(6201..6947)
DNA (747bp) protein (249aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
3-dehydroquinate dehydratase n=2 Tax=Megasphaera RepID=S7J4V6_9FIRM
3-dehydroquinate dehydratase
L3_058_000M1_scaffold_228_7
Megasphaera micronuciformis, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(7101..7979)
DNA (879bp) protein (293aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=706434 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera micronuciformis F0359.;"
Shikimate/quinate 5-dehydrogenase I beta (EC:1.1.1.282)
Shikimate dehydrogenase n=1 Tax=Megasphaera micronuciformis F0359 RepID=E2Z9D3_9FIRM
L3_058_000M1_scaffold_228_8
Megasphaera micronuciformis, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(8118..10124)
DNA (2007bp) protein (669aa)
NADH:flavin oxidoreductase (EC:1.6.-.-)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Megasphaera micronuciformis F0359 RepID=E2Z9D4_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EFQ05113.1}; TaxID=706434 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera micronuciformis F0359.;"
L3_058_000M1_scaffold_228_9
Megasphaera sp. BV3C16-1, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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10520..11413
DNA (894bp) protein (298aa)
LysR substrate-binding domain protein n=1 Tax=Megasphaera sp. BV3C16-1 RepID=U7UFA2_9FIRM
LysR substrate-binding domain protein {ECO:0000313|EMBL:ERT57996.1}; TaxID=1111454 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. BV3C16-1.;"
HTH-type transcriptional regulator gltC
L3_058_000M1_scaffold_228_10
Megasphaera micronuciformis, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(11415..12695)
DNA (1281bp) protein (427aa)
Transporter, major facilitator family protein n=1 Tax=Megasphaera micronuciformis F0359 RepID=E2Z9C9_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:EFQ05108.1}; TaxID=706434 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera micronuciformis F0359.;"
d-galactonate transporter
L3_058_000M1_scaffold_228_11
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(12902..13267)
DNA (366bp) protein (122aa)
Nitrogen regulatory protein P-II n=2 Tax=Megasphaera RepID=G0VLB7_MEGEL
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:CCC72497.1}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
L3_058_000M1_scaffold_228_12
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(13279..14691)
DNA (1413bp) protein (471aa)
Ammonium transporter n=2 Tax=Megasphaera RepID=S7HTK6_9FIRM
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
ammonium transporter
L3_058_000M1_scaffold_228_13
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(14964..15938)
DNA (975bp) protein (325aa)
Transporter n=2 Tax=Megasphaera RepID=S7HNL5_9FIRM
Transporter {ECO:0000313|EMBL:EPP19004.1}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
transporter
L3_058_000M1_scaffold_228_14
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(16016..17206)
DNA (1191bp) protein (397aa)
Amidohydrolase n=1 Tax=Megasphaera elsdenii DSM 20460 RepID=G0VLB4_MEGEL
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:CCC72494.1}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
L3_058_000M1_scaffold_228_15
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

17406..18989
DNA (1584bp) protein (528aa)
Chloride transporter n=1 Tax=Megasphaera elsdenii DSM 20460 RepID=G0VLB3_MEGEL
chloride transporter
Chloride transporter {ECO:0000313|EMBL:CCC72493.1}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
L3_058_000M1_scaffold_228_16
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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19204..19812
DNA (609bp) protein (203aa)
3D domain protein n=2 Tax=Megasphaera RepID=G0VLB2_MEGEL
hypothetical protein
3D domain protein {ECO:0000313|EMBL:CCC72492.1}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
L3_058_000M1_scaffold_228_17
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

19955..21328
DNA (1374bp) protein (458aa)
Bifunctional protein GlmU n=2 Tax=Megasphaera RepID=S7HHD2_9FIRM
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
bifunctional protein glmU
L3_058_000M1_scaffold_228_18
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

21403..22368
DNA (966bp) protein (322aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583, ECO:0000313|EMBL:CCC72490.1}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
Ribose-phosphate pyrophosphokinase n=2 Tax=Megasphaera RepID=G0VLB0_MEGEL
ribose-phosphate pyrophosphokinase
L3_058_000M1_scaffold_228_19
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

22381..22953
DNA (573bp) protein (191aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
Peptidyl-tRNA hydrolase n=2 Tax=Megasphaera RepID=G0VLA9_MEGEL
peptidyl-tRNA hydrolase
L3_058_000M1_scaffold_228_20
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

23015..24034
DNA (1020bp) protein (340aa)
Metallo-beta-lactamase domain protein n=2 Tax=Megasphaera RepID=S7HTQ4_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EPP19012.1}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
metallo-beta-lactamase domain protein
L3_058_000M1_scaffold_228_21
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

24524..24976
DNA (453bp) protein (151aa)
Desulfoferrodoxin n=4 Tax=Megasphaera RepID=G0VLA6_MEGEL
desulfoferrodoxin
Desulfoferrodoxin {ECO:0000313|EMBL:EPP19014.1}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
L3_058_000M1_scaffold_228_22
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

24999..25544
DNA (546bp) protein (182aa)
Glutathione peroxidase n=2 Tax=Megasphaera RepID=G0VLA5_MEGEL
glutathione peroxidase
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
L3_058_000M1_scaffold_228_23
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

25979..29488
DNA (3510bp) protein (1170aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
Pyruvate-flavodoxin oxidoreductase n=1 Tax=Megasphaera sp. NM10 RepID=S7IT25_9FIRM
pyruvate-flavodoxin oxidoreductase
L3_058_000M1_scaffold_228_24
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(30101..31021)
DNA (921bp) protein (307aa)
Transcriptional regulator n=1 Tax=Megasphaera elsdenii CAG:570 RepID=R7MVI7_9FIRM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CDF04361.1}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
L3_058_000M1_scaffold_228_25
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

31620..32915
DNA (1296bp) protein (432aa)
Serine transporter n=2 Tax=Megasphaera RepID=G0VLA1_MEGEL
serine transporter
Serine transporter {ECO:0000313|EMBL:CDF04362.1}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
L3_058_000M1_scaffold_228_26
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

33330..34799
DNA (1470bp) protein (490aa)
Chorismate binding enzyme n=1 Tax=Megasphaera elsdenii CAG:570 RepID=R7MX33_9FIRM
Chorismate binding enzyme {ECO:0000313|EMBL:CDF04363.1}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
chorismate binding enzyme
L3_058_000M1_scaffold_228_27
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

34796..35362
DNA (567bp) protein (189aa)
Uncharacterized protein n=2 Tax=Megasphaera RepID=S7IXB5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPP14620.1}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
hypothetical protein
L3_058_000M1_scaffold_228_28
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

35394..36416
DNA (1023bp) protein (341aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
Anthranilate phosphoribosyltransferase n=2 Tax=Megasphaera RepID=G0VL98_MEGEL
anthranilate phosphoribosyltransferase
L3_058_000M1_scaffold_228_29
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

36429..37217
DNA (789bp) protein (263aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
Indole-3-glycerol phosphate synthase n=2 Tax=Megasphaera RepID=G0VL97_MEGEL
indole-3-glycerol phosphate synthase
L3_058_000M1_scaffold_228_30
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

37210..37812
DNA (603bp) protein (201aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Megasphaera elsdenii CAG:570 RepID=R7MWW9_9FIRM
N-(5'-phosphoribosyl)anthranilate isomerase
Displaying items 1-30 of 67 in total

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