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L3_058_000M1_scaffold_324

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_324_1
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(3..2726)
DNA (2724bp) protein (908aa)
pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase n=2 Tax=Bacteroides RepID=C6Z2F0_9BACE
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EOS01715.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_058_000M1_scaffold_324_2
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2880..4301
DNA (1422bp) protein (474aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:KDS31296.1}; EC=2.1.1.- {ECO:0000313|EMBL:KDS31296.1};; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
RNA methyltransferase n=1 Tax=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) RepID=A6L5L9_BACV8
RNA methyltransferase
L3_058_000M1_scaffold_324_3
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4346..5272
DNA (927bp) protein (309aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=435590 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154).;"
Putative RNA pseudouridylate synthase n=1 Tax=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) RepID=A6L5L8_BACV8
RNA pseudouridylate synthase
L3_058_000M1_scaffold_324_4
Bacteroides dorei, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5663..5833)
DNA (171bp) protein (57aa)
Putative uncharacterized protein n=1 Tax=Bacteroides dorei DSM 17855 RepID=B6W1W2_9BACE
Putative uncharacterized protein {ECO:0000313|EMBL:EEB24039.1}; TaxID=483217 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides dorei DSM 17855.;"
L3_058_000M1_scaffold_324_5
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6391..8511)
DNA (2121bp) protein (707aa)
Prolyl oligopeptidase family protein n=3 Tax=root RepID=A6L5L7_BACV8
Prolyl oligopeptidase family protein {ECO:0000313|EMBL:KDS31293.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
prolyl oligopeptidase
L3_058_000M1_scaffold_324_6
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(8738..10603)
DNA (1866bp) protein (622aa)
Membrane protein insertase YidC n=7 Tax=root RepID=YIDC_BACV8
inner membrane protein translocase component YidC
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=702446 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus PC510.;"
L3_058_000M1_scaffold_324_7
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10643..12241)
DNA (1599bp) protein (533aa)
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
CTP synthase n=7 Tax=Bacteroides RepID=A6L5L5_BACV8
L3_058_000M1_scaffold_324_8
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12403..13845
DNA (1443bp) protein (481aa)
Uncharacterized protein n=8 Tax=Bacteroides RepID=C3RAZ4_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KDS31290.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
hypothetical protein
L3_058_000M1_scaffold_324_9
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(13817..14773)
DNA (957bp) protein (319aa)
Putative UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) RepID=A6L5L3_BACV8
UDP-N-acetylglucosamine 2-epimerase
UDP-N-acetylglucosamine 2-epimerase family protein {ECO:0000313|EMBL:KDS31289.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
L3_058_000M1_scaffold_324_10
Bacteroides sp. 9_1_42FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14857..15471
DNA (615bp) protein (205aa)
Uncharacterized protein n=16 Tax=Bacteroides RepID=A6L5L2_BACV8
membrane protein
Uncharacterized protein {ECO:0000313|EMBL:EEO61691.1}; TaxID=457395 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 9_1_42FAA.;"
L3_058_000M1_scaffold_324_11

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15630..16133
DNA (504bp) protein (168aa)
Sigma-70 region 2 n=14 Tax=root RepID=C3Q293_9BACE
RNA polymerase sigma factor
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EKC50010.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_058_000M1_scaffold_324_12
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16323..18098
DNA (1776bp) protein (592aa)
Pyruvate carboxylase subunit B n=5 Tax=Bacteroides RepID=A6L5K8_BACV8
pyruvate carboxylase subunit B
HMGL-like protein {ECO:0000313|EMBL:CDF17878.1}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
L3_058_000M1_scaffold_324_13
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18224..19102
DNA (879bp) protein (293aa)
Xylanase n=6 Tax=Bacteroides RepID=E5URK9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KDS47771.1}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
xylanase
L3_058_000M1_scaffold_324_14
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19080..19796)
DNA (717bp) protein (239aa)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
Monofunctional biosynthetic peptidoglycan transglycosylase n=6 Tax=Bacteroides RepID=A6L5K6_BACV8
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase
L3_058_000M1_scaffold_324_15
Bacteroides dorei, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19925..20644)
DNA (720bp) protein (240aa)
Outer membrane protein, OmpA family n=12 Tax=Bacteroides RepID=A6L5K5_BACV8
membrane protein
Putative uncharacterized protein {ECO:0000313|EMBL:EEB24814.1}; TaxID=483217 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides dorei DSM 17855.;"
L3_058_000M1_scaffold_324_16
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20693..22036)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=6 Tax=Bacteroides RepID=A6L5K4_BACV8
hypothetical protein
MATE efflux family protein {ECO:0000313|EMBL:EIY74822.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
L3_058_000M1_scaffold_324_17
Bacteroides sp. 3_1_40A, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(22235..23515)
DNA (1281bp) protein (427aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=469593 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_40A.;"
Serine hydroxymethyltransferase n=7 Tax=Bacteroides RepID=GLYA_BACV8
L3_058_000M1_scaffold_324_18
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23762..24481)
DNA (720bp) protein (240aa)
Uncharacterized protein n=2 Tax=Bacteroides vulgatus RepID=I8ZH45_BACVU
Uncharacterized protein {ECO:0000313|EMBL:EIY74820.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
hypothetical protein
L3_058_000M1_scaffold_324_19
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24491..25078)
DNA (588bp) protein (196aa)
Flavoredoxin n=6 Tax=Bacteroides RepID=A6L5K1_BACV8
flavoredoxin
Flavin reductase like domain protein {ECO:0000313|EMBL:KDS31279.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
L3_058_000M1_scaffold_324_20
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25084..25551)
DNA (468bp) protein (156aa)
aspartate carbamoyltransferase regulatory subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase regulatory chain n=7 Tax=Bacteroides RepID=PYRI_BACV8
Aspartate carbamoyltransferase regulatory chain {ECO:0000256|HAMAP-Rule:MF_00002}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_058_000M1_scaffold_324_21
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25560..26501)
DNA (942bp) protein (314aa)
pyrB; aspartate carbamoyltransferase catalytic subunit (EC:2.1.3.2)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
Aspartate carbamoyltransferase n=6 Tax=Bacteroides RepID=PYRB_BACV8
L3_058_000M1_scaffold_324_22
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

26662..28989
DNA (2328bp) protein (776aa)
Glycosyltransferase family 51, candidate bifunctional family GT51 beta-glycosyltransferase/PBP transpeptidase n=6 Tax=Bacteroides RepID=A6L5J8_BACV8
glycosyl transferase family protein
Penicillin-binding protein 1A {ECO:0000313|EMBL:EOS01736.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_058_000M1_scaffold_324_23
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29196..30023
DNA (828bp) protein (276aa)
Uncharacterized protein n=6 Tax=Bacteroides RepID=A6L5J7_BACV8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EET15080.1}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
L3_058_000M1_scaffold_324_24
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30098..31021)
DNA (924bp) protein (308aa)
Transcriptional regulator n=3 Tax=Bacteroides RepID=E5URJ9_9BACE
Bacterial regulatory helix-turn-helix s, AraC family protein {ECO:0000313|EMBL:KDS47782.1}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
transcriptional regulator
L3_058_000M1_scaffold_324_25
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31173..31829)
DNA (657bp) protein (219aa)
translaldolase (EC:2.2.1.2)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
Probable transaldolase n=6 Tax=Bacteroides RepID=TAL_BACV8
L3_058_000M1_scaffold_324_26
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31926..33032)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=I8ZIL8_BACVU
Uncharacterized protein {ECO:0000313|EMBL:CDF17864.1}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
ABC transporter permease
L3_058_000M1_scaffold_324_27
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33045..34151)
DNA (1107bp) protein (369aa)
ABC-2 type transporter n=3 Tax=Bacteroides RepID=C6Z2H5_9BACE
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
multidrug ABC transporter permease
L3_058_000M1_scaffold_324_28
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34175..35629)
DNA (1455bp) protein (485aa)
ABC transporter, ATP-binding protein n=2 Tax=Bacteroides RepID=C6Z2H6_9BACE
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EET15085.1}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
ABC transporter ATP-binding protein
L3_058_000M1_scaffold_324_29
Bacteroides sp. 3_1_40A, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35638..36534)
DNA (897bp) protein (299aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=C6Z2H7_9BACE
ABC transport system {ECO:0000313|EMBL:EFV68259.1}; TaxID=469593 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_40A.;"
membrane protein
L3_058_000M1_scaffold_324_30
Bacteroides sp. 3_1_40A, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(36521..37819)
DNA (1299bp) protein (433aa)
Outer membrane efflux protein n=3 Tax=Bacteroides RepID=C6Z2H8_9BACE
Outer membrane efflux protein {ECO:0000313|EMBL:EFV68258.1}; TaxID=469593 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_40A.;"
transporter
Displaying items 1-30 of 60 in total

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