ggKbase home page

L3_058_000M1_scaffold_500

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_500_1
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1..2070)
DNA (2070bp) protein (690aa)
Helicase n=1 Tax=Alistipes sp. CAG:29 RepID=R6XXK4_9BACT
Helicase {ECO:0000313|EMBL:CDD26375.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
helicase
L3_058_000M1_scaffold_500_2
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2741..3385
DNA (645bp) protein (215aa)
Conserved domain protein n=1 Tax=Alistipes sp. CAG:29 RepID=R6XRN4_9BACT
Conserved domain protein {ECO:0000313|EMBL:CDD26373.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
L3_058_000M1_scaffold_500_3
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3496..4926)
DNA (1431bp) protein (477aa)
Plasmid recombination enzyme n=1 Tax=Alistipes sp. CAG:29 RepID=R6Z784_9BACT
Plasmid recombination enzyme {ECO:0000313|EMBL:CDD26372.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
Plasmid recombination enzyme.
L3_058_000M1_scaffold_500_4
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5153..6034)
DNA (882bp) protein (294aa)
DNA primase (EC:2.7.7.-)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:29 RepID=R6YCL4_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDD26371.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
L3_058_000M1_scaffold_500_5
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6149..7204)
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:29 RepID=R6XXK0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDD26370.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
hypothetical protein
L3_058_000M1_scaffold_500_6
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7207..7497)
DNA (291bp) protein (97aa)
DNA binding domain, excisionase family n=8 Tax=Bacteroidales RepID=A7A9K9_9PORP
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:EKN31116.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
DNA binding domain-containing protein
L3_058_000M1_scaffold_500_7
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7628..8509)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Alistipes onderdonkii RepID=UPI000380C397
Uncharacterized protein {ECO:0000313|EMBL:CDD26368.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
hypothetical protein
L3_058_000M1_scaffold_500_8
Bacteroides fragilis, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8592..9794)
DNA (1203bp) protein (401aa)
Site-specific recombinase, phage integrase family n=2 Tax=Bacteroides RepID=D4WA90_BACOV
Phage integrase family protein {ECO:0000313|EMBL:EXZ81669.1}; TaxID=1339273 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides fragilis str. B1 (UDC16-1).;"
site-specific recombinase
L3_058_000M1_scaffold_500_9
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9961..10878)
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003602278
Uncharacterized protein {ECO:0000313|EMBL:CDE63931.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
hypothetical protein
L3_058_000M1_scaffold_500_10
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10880..11329)
DNA (450bp) protein (150aa)
aspartyl-tRNA amidotransferase subunit B n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002EC11E5
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBK63085.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L3_058_000M1_scaffold_500_11
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11364..13934)
DNA (2571bp) protein (857aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00037BC050
Fibronectin type III domain protein {ECO:0000313|EMBL:CDD25990.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
hypothetical protein
L3_058_000M1_scaffold_500_12
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14274..15719)
DNA (1446bp) protein (482aa)
sodium/iodide co-transporter n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002DF05B5
Na+/proline symporter
Na+/proline symporter {ECO:0000313|EMBL:AFL79230.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L3_058_000M1_scaffold_500_13
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15986..17842
DNA (1857bp) protein (619aa)
carboxylase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002DE5B72
Biotin-requiring enzyme {ECO:0000313|EMBL:EDS02358.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
pyruvate/oxaloacetate carboxyltransferase
L3_058_000M1_scaffold_500_14
unknown

Not on your lists

18098..18691
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000371A8EF
L3_058_000M1_scaffold_500_15
Tannerella sp. 6_1_58FAA_CT1, Tannerella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18752..19231)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002E1229D
C_GCAxxG_C_C family protein {ECO:0000313|EMBL:EHL82606.1}; TaxID=665949 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Tannerella.;" source="Tannerella sp. 6_1_58FAA_CT1.;"
hypothetical protein
L3_058_000M1_scaffold_500_16
Barnesiella intestinihominis, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19373..19978)
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003167D43
Uncharacterized protein {ECO:0000313|EMBL:EJZ65889.1}; TaxID=742726 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella intestinihominis YIT 11860.;"
LuxR family transcriptional regulator
L3_058_000M1_scaffold_500_17
Barnesiella viscericola, Barnesiella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19975..20676)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003784E4B
cation-binding protein
Cation-binding protein {ECO:0000313|EMBL:AHF12001.1}; TaxID=880074 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Barnesiella.;" source="Barnesiella viscericola DSM 18177.;"
L3_058_000M1_scaffold_500_18
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21073..22263
DNA (1191bp) protein (397aa)
saccharopine dehydrogenase n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002EA144E
Saccharopine dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:CDD24662.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
saccharopine dehydrogenase-like oxidoreductase
L3_058_000M1_scaffold_500_19
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22334..23104)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F6A090
S1/P1 Nuclease {ECO:0000313|EMBL:CDE63510.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
S1/P1 Nuclease
L3_058_000M1_scaffold_500_20
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23116..24711)
DNA (1596bp) protein (532aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes putredinis CAG:67.;"
transcription termination factor Rho n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000305E255
transcription termination factor Rho
L3_058_000M1_scaffold_500_21
unknown

Not on your lists

comp(24946..25188)
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003046AE0
L3_058_000M1_scaffold_500_22
Bacteroides xylanisolvens, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25454..26041)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003188361
Nitroreductase
Nitroreductase family protein {ECO:0000313|EMBL:CDM06833.1}; TaxID=702447 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides xylanisolvens SD CC 1b.;"
L3_058_000M1_scaffold_500_23
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27065..28438
DNA (1374bp) protein (458aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00036126D7
Uncharacterized protein {ECO:0000313|EMBL:EGN04750.1}; TaxID=665954 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus 3_8_47FAA.;"
Fibrobacter succinogenes major domain (Fib_succ_major).
L3_058_000M1_scaffold_500_24
unknown

Not on your lists

28469..29884
DNA (1416bp) protein (472aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002F2FF8C
L3_058_000M1_scaffold_500_25
Coprobacter fastidiosus, Coprobacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30049..31185
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003661ADA
Aminopeptidase {ECO:0000313|EMBL:ERM88603.1}; TaxID=1349822 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Coprobacter.;" source="Coprobacter fastidiosus NSB1.;"
aminopeptidase C
L3_058_000M1_scaffold_500_26
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31120..32037)
DNA (918bp) protein (306aa)
tRNA isopentenyltransferase (miaA) (EC:2.5.1.75)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI000374E2B3
L3_058_000M1_scaffold_500_27
Alistipes putredinis, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32030..32737)
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0002E9A551
Uncharacterized protein {ECO:0000313|EMBL:EDS02511.1}; TaxID=445970 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes putredinis DSM 17216.;"
Plasmid pRiA4b ORF-3-like protein
L3_058_000M1_scaffold_500_28
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32800..33846)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI00036D1818
NAD-dependent aldehyde dehydrogenase
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:AFL79449.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L3_058_000M1_scaffold_500_29
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

34437..35798
DNA (1362bp) protein (454aa)
hypothetical protein n=1 Tax=Bacteroidales bacterium ph8 RepID=UPI0003051301
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EFR57014.1}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
site-specific recombinase XerD
L3_058_000M1_scaffold_500_30
Flexibacter litoralis, Flexibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(36243..37763)
DNA (1521bp) protein (507aa)
Uncharacterized protein containing a von Willebrand factor type A (VWA) domain n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4ALS1_FLELS
hypothetical protein
Uncharacterized protein containing a von Willebrand factor type A (VWA) domain {ECO:0000313|EMBL:AFM04906.1}; TaxID=880071 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Flexibacter.;" source="Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 /; NCIMB 1366 / Sio-4).;"
Displaying items 1-30 of 56 in total

View Taxonomy