ggKbase home page

L3_058_000M1_scaffold_960

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_960_1
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3..98)
DNA (96bp) protein (32aa)
ABC transporter ATP-binding protein n=5 Tax=Bacteroides RepID=A6L2U1_BACV8
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EOS05929.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_058_000M1_scaffold_960_2
Bacteroides sp. 3_1_40A, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(461..856)
DNA (396bp) protein (132aa)
Efflux transporter, RND family, MFP subunit n=5 Tax=Bacteroides RepID=C6Z4A2_9BACE
ABC transporter permease {ECO:0000313|EMBL:EFV67230.1}; TaxID=469593 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_40A.;"
ABC transporter permease
L3_058_000M1_scaffold_960_3
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(825..1604)
DNA (780bp) protein (260aa)
ABC transporter permease n=2 Tax=Bacteroides vulgatus RepID=A6L2T8_BACV8
ABC transporter permease
HlyD family secretion protein {ECO:0000313|EMBL:EOS05928.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_058_000M1_scaffold_960_4
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1766..2659)
DNA (894bp) protein (298aa)
Glycoside hydrolase family 73 n=7 Tax=Bacteroides RepID=A6L2T7_BACV8
glycoside hydrolase
Uncharacterized protein {ECO:0000313|EMBL:EOS05927.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_058_000M1_scaffold_960_5
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2768..3409)
DNA (642bp) protein (214aa)
Uncharacterized protein n=2 Tax=Bacteroides vulgatus RepID=A6L2T6_BACV8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDS32048.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
L3_058_000M1_scaffold_960_6
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3565..4113)
DNA (549bp) protein (183aa)
Uncharacterized protein n=6 Tax=Bacteroides RepID=A6L2T5_BACV8
Uncharacterized protein {ECO:0000313|EMBL:EET15714.1}; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
hypothetical protein
L3_058_000M1_scaffold_960_7
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4135..4497)
DNA (363bp) protein (121aa)
Uncharacterized protein n=6 Tax=Bacteroides RepID=A6L2T4_BACV8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOS05924.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_058_000M1_scaffold_960_8
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4593..4973)
DNA (381bp) protein (127aa)
RNA polymerase sigma factor n=6 Tax=Bacteroides RepID=A6L2T3_BACV8
RNA polymerase ECF-type sigma factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_058_000M1_scaffold_960_9
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5281..5952
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Bacteroides vulgatus CAG:6 RepID=R7P1T8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDF19714.1}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
hypothetical protein
L3_058_000M1_scaffold_960_10
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5986..6597
DNA (612bp) protein (204aa)
Uncharacterized protein n=4 Tax=Bacteroides RepID=A6L2T1_BACV8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDS55673.1}; TaxID=1339352 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3975 RP4.;"
L3_058_000M1_scaffold_960_11
Bacteroides dorei, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6667..6990)
DNA (324bp) protein (108aa)
UPF0145 protein BVU_2335 n=16 Tax=root RepID=Y2335_BACV8
hypothetical protein
UPF0145 protein HMPREF1064_00944 {ECO:0000256|HAMAP-Rule:MF_00338}; TaxID=997876 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides dorei CL02T12C06.;"
L3_058_000M1_scaffold_960_12
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7183..7689
DNA (507bp) protein (169aa)
Cytidine deaminase n=1 Tax=Bacteroides vulgatus dnLKV7 RepID=R9HPV4_BACVU
Putative cytidine deaminase {ECO:0000313|EMBL:EFG16275.1}; TaxID=702446 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus PC510.;"
cytidine deaminase
L3_058_000M1_scaffold_960_13
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7686..8738
DNA (1053bp) protein (351aa)
Uncharacterized protein n=2 Tax=Bacteroides vulgatus RepID=A6L2S8_BACV8
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EFG16274.1}; TaxID=702446 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus PC510.;"
L3_058_000M1_scaffold_960_14
Bacteroides sp. 3_1_40A, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8805..10316)
DNA (1512bp) protein (504aa)
Uncharacterized protein n=7 Tax=Bacteroides RepID=A6L2S7_BACV8
Uncharacterized protein {ECO:0000313|EMBL:EFV67219.1}; TaxID=469593 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_40A.;"
hypothetical protein
L3_058_000M1_scaffold_960_15
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10506..12125)
DNA (1620bp) protein (540aa)
ABC transporter ATP-binding protein n=11 Tax=root RepID=A6L2S6_BACV8
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDF19708.1}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
ABC transporter ATP-binding protein
L3_058_000M1_scaffold_960_16
Bacteroides dorei, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12303..12923
DNA (621bp) protein (207aa)
Protein GrpE n=15 Tax=Bacteroides RepID=A6L2S5_BACV8
molecular chaperone GrpE
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=483217 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides dorei DSM 17855.;"
L3_058_000M1_scaffold_960_17
Bacteroides dorei, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12942..14117
DNA (1176bp) protein (392aa)
Chaperone protein DnaJ n=13 Tax=root RepID=A6L2S4_BACV8
chaperone protein DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=556260 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides dorei 5_1_36/D4.;"
L3_058_000M1_scaffold_960_18
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14212..15498
DNA (1287bp) protein (429aa)
Bifunctional FolC family protein {ECO:0000313|EMBL:KDS32062.1}; EC=6.3.2.- {ECO:0000313|EMBL:KDS32062.1};; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
FolC protein n=1 Tax=Bacteroides vulgatus dnLKV7 RepID=R9HQ34_BACVU
folylpolyglutamate synthase
L3_058_000M1_scaffold_960_19
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15593..16687
DNA (1095bp) protein (365aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
Aldose 1-epimerase n=3 Tax=Bacteroides RepID=I9A3N9_BACVU
aldose 1-epimerase
L3_058_000M1_scaffold_960_20
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16734..18074
DNA (1341bp) protein (447aa)
Glucose/galactose transporter n=7 Tax=Bacteroides RepID=A6L2S1_BACV8
glucose/galactose transporter
Uncharacterized protein {ECO:0000313|EMBL:EIY81973.1}; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
L3_058_000M1_scaffold_960_21
Bacteroides vulgatus CAG:6, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18115..19269
DNA (1155bp) protein (385aa)
Galactokinase n=7 Tax=Bacteroides RepID=A6L2S0_BACV8
galactokinase
Galactokinase {ECO:0000256|SAAS:SAAS00025843}; TaxID=1263056 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides vulgatus CAG:6.;"
L3_058_000M1_scaffold_960_22
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19475..20620
DNA (1146bp) protein (382aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
Aldose 1-epimerase n=5 Tax=Bacteroides RepID=D4VCW2_BACVU
aldose 1-epimerase
L3_058_000M1_scaffold_960_23
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20647..22389
DNA (1743bp) protein (581aa)
Na+/glucose cotransporter n=3 Tax=Bacteroides vulgatus RepID=A6L2R8_BACV8
Sodium symporter family protein {ECO:0000313|EMBL:KDS32067.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
Na+/glucose cotransporter
L3_058_000M1_scaffold_960_24
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

22465..23142
DNA (678bp) protein (226aa)
Uncharacterized protein n=15 Tax=Bacteroides RepID=A6L2R7_BACV8
DNA mismatch repair protein MutT
NUDIX family hydrolase {ECO:0000313|EMBL:KDS32068.1}; TaxID=1339350 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus str. 3775 SL(B) 10 (iv).;"
L3_058_000M1_scaffold_960_25
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23147..23899
DNA (753bp) protein (251aa)
araD; L-ribulose-5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose-5-phosphate 4-epimerase n=6 Tax=Bacteroides RepID=C6Z4C4_9BACE
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:EOS05904.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_058_000M1_scaffold_960_26
Bacteroides sp. 4_3_47FAA, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23939..25468
DNA (1530bp) protein (510aa)
L-arabinose isomerase {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909}; EC=5.3.1.4 {ECO:0000256|HAMAP-Rule:MF_00519, ECO:0000256|SAAS:SAAS00008909};; TaxID=457394 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 4_3_47FAA.;"
L-arabinose isomerase n=6 Tax=Bacteroides RepID=C6Z4C5_9BACE
arabinose isomerase
L3_058_000M1_scaffold_960_27
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25571..27169
DNA (1599bp) protein (533aa)
Xylulose kinase n=4 Tax=Bacteroides RepID=A6L2R4_BACV8
Xylulose kinase {ECO:0000313|EMBL:ABR39978.1}; TaxID=435590 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154).;"
xylulose kinase
L3_058_000M1_scaffold_960_28
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27304..29316
DNA (2013bp) protein (671aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=997891 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus CL09T03C04.;"
Transketolase n=7 Tax=root RepID=C6Z4C7_9BACE
transketolase
L3_058_000M1_scaffold_960_29
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29313..29747
DNA (435bp) protein (145aa)
Ribose 5-phosphate isomerase B n=7 Tax=Bacteroides RepID=A6L2R2_BACV8
ribose 5-phosphate isomerase B
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:EOS05900.1}; TaxID=1235786 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus dnLKV7.;"
L3_058_000M1_scaffold_960_30
Bacteroides vulgatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29854..30951
DNA (1098bp) protein (366aa)
Uncharacterized protein n=2 Tax=Bacteroides vulgatus RepID=A6L2R1_BACV8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR39975.1}; TaxID=435590 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154).;"
Displaying items 1-30 of 56 in total

View Taxonomy