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L3_058_000M1_scaffold_1202

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_1202_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..534)
DNA (534bp) protein (178aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00046836}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00046836};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
1 4-alpha-glucan branching enzyme n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SYQ6_9FIRM
Carbohydrate-Binding Module Family 48 protein / Glycoside Hydrolase Family 13 protein
L3_058_000M1_scaffold_1202_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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722..1282
DNA (561bp) protein (187aa)
Regulatory protein TetR n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T9D6_9FIRM
Transcriptional regulator, TetR family
Regulatory protein TetR {ECO:0000313|EMBL:CDC66324.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_1202_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1400..3919)
DNA (2520bp) protein (840aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T289_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66325.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_058_000M1_scaffold_1202_4
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3906..4718)
DNA (813bp) protein (271aa)
Cell wall-binding repeat protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TEN0_9FIRM
hypothetical protein
Cell wall-binding repeat protein {ECO:0000313|EMBL:CDC66326.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_1202_5
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4781..6340)
DNA (1560bp) protein (520aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
galT; Galactose-1-phosphate uridylyltransferase (EC:2.7.7.12)
Galactose-1-phosphate uridylyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U649_9FIRM
L3_058_000M1_scaffold_1202_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6896..8566
DNA (1671bp) protein (557aa)
leuA; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
2-isopropylmalate synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SYR1_9FIRM
L3_058_000M1_scaffold_1202_7
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8653..10797)
DNA (2145bp) protein (715aa)
Polyphosphate kinase {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191}; EC=2.7.4.1 {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ppk2; K00937 polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T9E0_9FIRM
L3_058_000M1_scaffold_1202_8
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10965..11246)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T294_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66330.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_058_000M1_scaffold_1202_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11556..11999
DNA (444bp) protein (148aa)
Transcriptional regulator MarR family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TEN6_9FIRM
Transcriptional regulator, MarR family
Transcriptional regulator MarR family {ECO:0000313|EMBL:CDC66331.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_1202_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12009..12203
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U655_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05930.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_1202_11
unknown

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12359..12622
DNA (264bp) protein (88aa)

This feature has no annotations

L3_058_000M1_scaffold_1202_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12721..12957
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SYR6_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05931.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_1202_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12944..13546
DNA (603bp) protein (201aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
sip3; Signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T9E3_9FIRM
L3_058_000M1_scaffold_1202_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13591..19341
DNA (5751bp) protein (1917aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2A0_9FIRM
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:CDC66335.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_058_000M1_scaffold_1202_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19370..20956
DNA (1587bp) protein (529aa)
Cna protein B-type domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TEP1_9FIRM
Cna protein B-type domain protein {ECO:0000313|EMBL:CDC66336.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_058_000M1_scaffold_1202_16
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21020..21943
DNA (924bp) protein (308aa)
Sortase family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U661_9FIRM
srtA; Sortase family protein
Sortase family protein {ECO:0000313|EMBL:CDC66337.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_1202_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21933..22913
DNA (981bp) protein (327aa)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SYS3_9FIRM
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:CDC66338.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_058_000M1_scaffold_1202_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22957..23592
DNA (636bp) protein (212aa)
Sortase family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T9E7_9FIRM
Sortase family protein {ECO:0000313|EMBL:CDC66339.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
sortase family protein, putative
L3_058_000M1_scaffold_1202_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23632..23808)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2A5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66340.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Displaying 19 items

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