ggKbase home page

L3_058_000M1_scaffold_1422

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_1422_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..1372
DNA (1371bp) protein (457aa)
iorA; Indolepyruvate ferredoxin oxidoreductase, alpha subunit (EC:1.2.7.8)
Indolepyruvate oxidoreductase subunit IorA {ECO:0000256|PIRNR:PIRNR006439}; Short=IOR {ECO:0000256|PIRNR:PIRNR006439};; EC=1.2.7.8 {ECO:0000256|PIRNR:PIRNR006439, ECO:0000313|EMBL:CCO06258.1};; Indolepyruvate ferredoxin oxidoreductase subunit alpha {ECO:0000256|PIRNR:PIRNR006439}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Indolepyruvate ferredoxin oxidoreductase alpha subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TDB0_9FIRM
L3_058_000M1_scaffold_1422_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1401..1976
DNA (576bp) protein (192aa)
iorB; Indolepyruvate ferredoxin oxidoreductase, beta subunit (EC:1.2.7.8)
Indolepyruvate oxidoreductase subunit beta n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2L1_9FIRM
Indolepyruvate oxidoreductase subunit beta {ECO:0000313|EMBL:CDC67673.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_1422_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1976..2473
DNA (498bp) protein (166aa)
HD domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UA57_9FIRM
HD domain protein {ECO:0000313|EMBL:CDC67672.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_058_000M1_scaffold_1422_4
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2538..3845
DNA (1308bp) protein (436aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
paaK; Phenylacetate-CoA ligase (EC:6.2.1.30)
Phenylacetate-coenzyme A ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TIH3_9FIRM
L3_058_000M1_scaffold_1422_5
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3864..4298
DNA (435bp) protein (145aa)
ACT domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T645_9FIRM
hypothetical protein
ACT domain protein {ECO:0000313|EMBL:CDC67670.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_1422_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4454..4624
DNA (171bp) protein (57aa)
Ferredoxin n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TDA6_9FIRM
hypothetical protein
Ferredoxin {ECO:0000313|EMBL:CDC67669.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_1422_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5168..6373
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2K9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO06264.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_1422_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6595..8145
DNA (1551bp) protein (517aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UA52_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO06265.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_1422_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8199..8837
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TIH0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67666.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_058_000M1_scaffold_1422_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9195..13745
DNA (4551bp) protein (1517aa)
gltB; Glutamate synthase, large subunit (EC:1.4.1.14)
Glutamate synthase domain 2 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T641_9FIRM
Glutamate synthase domain 2 {ECO:0000313|EMBL:CDC67665.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_1422_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13823..15307
DNA (1485bp) protein (495aa)
gltD; glutamate synthase, NADH/NADPH, small subunit (EC:1.4.1.14)
Glutamate synthase, NADH/NADPH, small subunit {ECO:0000313|EMBL:CCO06268.1}; EC=1.4.1.14 {ECO:0000313|EMBL:CCO06268.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Glutamate synthase (NADH) small subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TDA1_9FIRM
L3_058_000M1_scaffold_1422_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15587..16477)
DNA (891bp) protein (297aa)
PP-loop domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2K5_9FIRM
ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000313|EMBL:CCO06361.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_1422_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16613..17170
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UA48_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO06362.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_1422_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17303..18184
DNA (882bp) protein (294aa)
ABC transporter substrate-binding protein family 3 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TIG6_9FIRM
Bacterial extracellular solute-binding protein, family 3
Bacterial extracellular solute-binding protein,family 3 {ECO:0000313|EMBL:CCO06363.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_1422_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18882..20735
DNA (1854bp) protein (618aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T637_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO06364.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein
Displaying 15 items

View Taxonomy