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L3_058_000M1_scaffold_1891

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_1891_1
Coprococcus eutactus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..144)
DNA (144bp) protein (48aa)
Uncharacterized protein n=2 Tax=Coprococcus RepID=A8SSH9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP26727.1}; TaxID=411474 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus eutactus ATCC 27759.;"
hypothetical protein
L3_058_000M1_scaffold_1891_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(228..458)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus 8 RepID=E9SFD5_RUMAL
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04206.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_1891_3
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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632..1150
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5V5E7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ83359.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
L3_058_000M1_scaffold_1891_4
unknown

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1147..1308
DNA (162bp) protein (54aa)

This feature has no annotations

L3_058_000M1_scaffold_1891_5
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1313..1681
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FEI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE13081.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
L3_058_000M1_scaffold_1891_6
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1727..2503)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F172_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:ERJ00863.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
hypothetical protein
L3_058_000M1_scaffold_1891_7
unknown

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comp(2604..2729)
DNA (126bp) protein (42aa)

This feature has no annotations

L3_058_000M1_scaffold_1891_8
unknown

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comp(2713..3090)
DNA (378bp) protein (126aa)

This feature has no annotations

L3_058_000M1_scaffold_1891_9
unknown

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comp(3105..3359)
DNA (255bp) protein (85aa)

This feature has no annotations

L3_058_000M1_scaffold_1891_10

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comp(3370..4269)
DNA (900bp) protein (300aa)
Putative uncharacterized protein n=1 Tax=unidentified phage RepID=H7BV58_9VIRU
Putative uncharacterized protein {ECO:0000313|EMBL:AFB75703.1}; TaxID=38018 species="Viruses; unclassified phages.;" source="unidentified phage.;"
hypothetical protein
L3_058_000M1_scaffold_1891_11
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4262..4771)
DNA (510bp) protein (170aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] id=5100000 bin=WS6_GWC1_33_20 species=WS6_GWE1_33_547 genus=WS6_GWE1_33_547 taxon_order=WS6_GWE1_33_547 taxon_class=WS6_GWE1_33_547 phylum=WS6 tax=WS6_GWC1_33_20 organism_group=WS6 (Doikabacteria)
DNA primase
Tax=RBG_13_Deltaproteobacteria_61_14_curated
L3_058_000M1_scaffold_1891_12
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4812..5633)
DNA (822bp) protein (274aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LEH9_RUMC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL18024.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_058_000M1_scaffold_1891_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5893..8766)
DNA (2874bp) protein (958aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,B subunit {ECO:0000313|EMBL:CCO04786.1}; EC=6.3.5.6 {ECO:0000313|EMBL:CCO04786.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC:6.3.5.6)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCG1_9FIRM
L3_058_000M1_scaffold_1891_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8781..10214)
DNA (1434bp) protein (478aa)
gatA; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC:6.3.5.6)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T589_9FIRM
L3_058_000M1_scaffold_1891_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10255..10533)
DNA (279bp) protein (93aa)
gatC; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit (EC:6.3.5.6)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,C subunit {ECO:0000313|EMBL:CCO04784.1}; EC=6.3.5.6 {ECO:0000313|EMBL:CCO04784.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THQ9_9FIRM
L3_058_000M1_scaffold_1891_16
unknown

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comp(10640..10732)
DNA (93bp) protein (31aa)

This feature has no annotations

L3_058_000M1_scaffold_1891_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10732..12006)
DNA (1275bp) protein (425aa)
lysA; Diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase {ECO:0000313|EMBL:CCO04783.1}; EC=4.1.1.20 {ECO:0000313|EMBL:CCO04783.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Diaminopimelate decarboxylase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U9C2_9FIRM
L3_058_000M1_scaffold_1891_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12227..14005)
DNA (1779bp) protein (593aa)
ABC transporter permease/ATP-binding protein (EC:3.6.3.-)
Efflux ABC transporter permease/ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1S4_9FIRM
Efflux ABC transporter permease/ATP-binding protein {ECO:0000313|EMBL:CDC67398.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_1891_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14022..15779)
DNA (1758bp) protein (586aa)
ABC transporter permease/ATP-binding protein (EC:3.6.3.-)
ABC transporter permease/ATP-binding protein {ECO:0000313|EMBL:CCO04781.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCO04781.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ABC transporter permease/ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCG5_9FIRM
L3_058_000M1_scaffold_1891_20
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15795..16052)
DNA (258bp) protein (86aa)
Transcriptional regulator MarR family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T595_9FIRM
Transcriptional regulator MarR family {ECO:0000313|EMBL:CDC67400.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
Displaying 20 items

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