ggKbase home page

L3_058_000M1_scaffold_2074

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_2074_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..156)
DNA (156bp) protein (52aa)
DnaJ domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UA13_9FIRM
DnaJ related protein
DnaJ related protein {ECO:0000313|EMBL:CCO06404.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_2074_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(153..1052)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2H7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67623.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L3_058_000M1_scaffold_2074_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1287..3053)
DNA (1767bp) protein (589aa)
ABC transporter permease/ATP-binding protein (EC:3.6.3.-)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TD70_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDC67624.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_2074_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3046..4266)
DNA (1221bp) protein (407aa)
ABC transporter permease/ATP-binding protein (EC:3.6.3.-)
ABC transporter permease/ATP-binding protein {ECO:0000313|EMBL:CCO06401.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCO06401.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T604_9FIRM
L3_058_000M1_scaffold_2074_5
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4266..4784)
DNA (519bp) protein (173aa)
ABC transporter permease/ATP-binding protein (EC:3.6.3.-)
ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T604_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDC67625.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_2074_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5329..6546
DNA (1218bp) protein (406aa)
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Tyrosine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TIE7_9FIRM
L3_058_000M1_scaffold_2074_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6747..7475
DNA (729bp) protein (243aa)
VTC domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UA17_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO06398.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_2074_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7468..8172
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2H8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO06397.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_2074_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8271..10214
DNA (1944bp) protein (648aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TD73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67629.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_058_000M1_scaffold_2074_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10444..11481)
DNA (1038bp) protein (346aa)
gap; Glyceraldehyde 3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Glyceraldehyde-3-phosphate dehydrogenase type I n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T610_9FIRM
L3_058_000M1_scaffold_2074_11
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11913..12995
DNA (1083bp) protein (361aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TIF1_9FIRM
hypothetical protein
L3_058_000M1_scaffold_2074_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13087..14610)
DNA (1524bp) protein (508aa)
gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6UA22_9FIRM
Displaying 12 items

View Taxonomy