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L3_058_000M1_scaffold_2826

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_2826_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..85)
DNA (84bp) protein (28aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3L2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04498.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_2826_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(219..1217)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66791.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_058_000M1_scaffold_2826_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1367..2464)
DNA (1098bp) protein (366aa)
hemN; putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:CCO04496.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CCO04496.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7J3_9FIRM
L3_058_000M1_scaffold_2826_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2461..2934)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T006_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04495.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_2826_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3299..5101)
DNA (1803bp) protein (601aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Elongation factor 4 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAS7_9FIRM
lepA; GTP-binding protein lepA
L3_058_000M1_scaffold_2826_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5231..6088)
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3L7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04493.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_2826_7
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6292..6513
DNA (222bp) protein (74aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFZ2_9FIRM
hypothetical protein predicted by Glimmer/Critica
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDC66796.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_2826_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6693..7196
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7J8_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04491.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_2826_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7285..7599)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T011_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04490.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_2826_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7760..8512)
DNA (753bp) protein (251aa)
RNA methyltransferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAT2_9FIRM
L3_058_000M1_scaffold_2826_11
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8970..9242)
DNA (273bp) protein (91aa)
ptsH2; Phosphocarrier protein HPr (EC:2.7.11.-)
Phosphocarrier HPr family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3M1_9FIRM
Phosphocarrier HPr family {ECO:0000313|EMBL:CDC66800.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_2826_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9526..10266)
DNA (741bp) protein (247aa)
trmD; tRNA (guanine-N1)-methyltransferase (EC:2.1.1.-)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFZ9_9FIRM
L3_058_000M1_scaffold_2826_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10268..10771)
DNA (504bp) protein (168aa)
Putative adenine-specific DNA methyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7K4_9FIRM
Putative adenine-specific DNA methyltransferase {ECO:0000313|EMBL:CDC66802.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_058_000M1_scaffold_2826_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10771..10956)
DNA (186bp) protein (62aa)
Ribosome maturation factor RimM n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T016_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
rimM; Ribosome maturation factor RimM
Displaying 14 items

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