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L3_058_000M1_scaffold_648

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_648_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

422..1747
DNA (1326bp) protein (442aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
xylA; xylose isomerase (EC:5.3.1.5)
Xylose isomerase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCA0_9FIRM
L3_058_000M1_scaffold_648_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1851..3143)
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1I9_9FIRM
Monovalent cation:proton antiporter 2 (CPA2) transporter family protein
Uncharacterized protein {ECO:0000313|EMBL:CDC67328.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_648_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3337..4614)
DNA (1278bp) protein (426aa)
Putative carbohydrate-active enzyme n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U941_9FIRM
Glycoside Hydrolase Family 5 protein
Glycoside Hydrolase Family 5 protein {ECO:0000313|EMBL:CCO03823.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_648_4
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4862..7576
DNA (2715bp) protein (905aa)
Putative carbohydrate-active enzyme n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THH8_9FIRM
Putative carbohydrate-active enzyme {ECO:0000313|EMBL:CDC67326.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Glycoside Hydrolase Family 5 protein
L3_058_000M1_scaffold_648_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7704..9467)
DNA (1764bp) protein (588aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T529_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO03821.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein predicted by Glimmer/Critica
L3_058_000M1_scaffold_648_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9469..11031)
DNA (1563bp) protein (521aa)
conserved hypothetical protein (EC:1.4.99.1)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67324.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_648_7
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11049..11510)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1I1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67323.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
putative membrane protein
L3_058_000M1_scaffold_648_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11865..13739)
DNA (1875bp) protein (625aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U935_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO03818.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
conserved hypothetical protein
L3_058_000M1_scaffold_648_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13888..14586)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THH2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67321.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_058_000M1_scaffold_648_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15458..16768
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T524_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67320.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
putative secreted protein
L3_058_000M1_scaffold_648_11
unknown

Not on your lists

comp(16841..17524)
DNA (684bp) protein (228aa)

This feature has no annotations

L3_058_000M1_scaffold_648_12

Not on your lists

comp(17526..18275)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZF62_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61966.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L3_058_000M1_scaffold_648_13

Not on your lists

comp(18272..19135)
DNA (864bp) protein (288aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZF61_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61965.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
ABC transporter
L3_058_000M1_scaffold_648_14

Not on your lists

comp(19128..19499)
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZF60_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61964.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
GntR family transcriptional regulator
L3_058_000M1_scaffold_648_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19934..22342)
DNA (2409bp) protein (803aa)
Glycoside Hydrolase Family 94 protein. Formerly known as glycosyltransferase family GT36 (EC:2.4.1.-)
Putative carbohydrate-active enzyme n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1H6_9FIRM
Putative carbohydrate-active enzyme {ECO:0000313|EMBL:CDC67318.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_648_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22687..23712
DNA (1026bp) protein (342aa)
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03813.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_648_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23729..24289
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THP6_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03812.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_648_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24347..24628)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T578_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67385.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_058_000M1_scaffold_648_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24862..26367)
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCF1_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03809.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_648_20
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26387..28111)
DNA (1725bp) protein (575aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1Q5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67383.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L3_058_000M1_scaffold_648_21
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28127..28831)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U9A6_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC67382.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_648_22
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28831..29808)
DNA (978bp) protein (326aa)
ABC transporter ATPase component (EC:3.6.3.-)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67381.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_058_000M1_scaffold_648_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30091..31539)
DNA (1449bp) protein (483aa)
gltX; Glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Glutamate--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T573_9FIRM
L3_058_000M1_scaffold_648_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31567..32106)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCE7_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO03804.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_648_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32103..33032)
DNA (930bp) protein (310aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ribF; Riboflavin kinase / FMN adenylyltransferase (EC:2.7.7.2)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1P9_9FIRM
L3_058_000M1_scaffold_648_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33059..33973)
DNA (915bp) protein (305aa)
truB; tRNA pseudouridine synthase B (EC:5.4.99.12)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000313|EMBL:CCO03802.1}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
tRNA pseudouridine synthase B n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U999_9FIRM
L3_058_000M1_scaffold_648_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33973..34920)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6THN1_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO03801.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_648_28
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34939..35295)
DNA (357bp) protein (119aa)
Ribosome-binding factor A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T568_9FIRM
rbfA; Ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_058_000M1_scaffold_648_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35385..37895)
DNA (2511bp) protein (837aa)
Translation initiation factor IF-2 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCE4_9FIRM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
infB; Translation initiation factor IF-2
L3_058_000M1_scaffold_648_30
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37930..38262)
DNA (333bp) protein (111aa)
Ribosomal protein L7Ae n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T1P4_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO03798.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Displaying items 1-30 of 60 in total

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