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L3_058_000M1_scaffold_516

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_000M1_scaffold_516_1
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..484
DNA (483bp) protein (161aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
glnS; glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GSQ7_9FIRM
L3_058_000M1_scaffold_516_2
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

590..1096
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H1W4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27446.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L3_058_000M1_scaffold_516_3
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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1107..1631
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HNH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27447.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L3_058_000M1_scaffold_516_4
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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1788..2972
DNA (1185bp) protein (395aa)
Serine hydroxymethyltransferase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GL83_9FIRM
Serine hydroxymethyltransferase {ECO:0000313|EMBL:CDB26233.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
beta-eliminating lyase family protein
L3_058_000M1_scaffold_516_5
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2980..6549
DNA (3570bp) protein (1190aa)
Chromosome partition protein Smc n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HJP1_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
smc; chromosome segregation protein SMC
L3_058_000M1_scaffold_516_6
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6562..7431
DNA (870bp) protein (290aa)
Signal recognition particle receptor FtsY n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GYA8_9FIRM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
ftsY; signal recognition particle receptor
L3_058_000M1_scaffold_516_7
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7446..8168
DNA (723bp) protein (241aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GWY0_9FIRM
L3_058_000M1_scaffold_516_8
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8165..8755
DNA (591bp) protein (197aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
rdgB; nucleoside-triphosphatase (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GL79_9FIRM
L3_058_000M1_scaffold_516_9
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8765..9085
DNA (321bp) protein (107aa)
RNA-binding protein YhbY family n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HJN6_9FIRM
RNA-binding protein YhbY family {ECO:0000313|EMBL:CDB26227.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_058_000M1_scaffold_516_10
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9082..10275
DNA (1194bp) protein (398aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000256|SAAS:SAAS00086517}; EC=2.7.7.18 {ECO:0000256|SAAS:SAAS00086517};; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
nadD; nicotinate-nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GYA1_9FIRM
L3_058_000M1_scaffold_516_11
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10272..10631
DNA (360bp) protein (120aa)
Ribosomal silencing factor RsfS n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GP78_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_058_000M1_scaffold_516_12
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10637..11350
DNA (714bp) protein (238aa)
Gliding motility protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GWX4_9FIRM
Gliding motility protein {ECO:0000313|EMBL:CDB26224.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
gliding motility protein
L3_058_000M1_scaffold_516_13
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11340..12914
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GL74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB26223.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_058_000M1_scaffold_516_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12963..13409)
DNA (447bp) protein (149aa)
Transcriptional regulator, MerR family n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZI57_9FIRM
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EFQ07132.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
MerR family transcriptional regulator
L3_058_000M1_scaffold_516_15
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13443..14114)
DNA (672bp) protein (224aa)
Pseudouridine synthase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HH36_9FIRM
Pseudouridine synthase {ECO:0000313|EMBL:CDB25312.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
pseudouridine synthase
L3_058_000M1_scaffold_516_16
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(14118..15464)
DNA (1347bp) protein (449aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CWS1_9FIRM
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CCX72350.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
L3_058_000M1_scaffold_516_17
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15610..15939
DNA (330bp) protein (110aa)
Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HH52_9FIRM
Competence protein ComEA helix-hairpin-helix repeat protein {ECO:0000313|EMBL:CDB25327.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_058_000M1_scaffold_516_18
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15936..16637
DNA (702bp) protein (234aa)
OmpR family two-component response regulator n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GLK4_9FIRM
OmpR family two-component response regulator {ECO:0000313|EMBL:CDB25330.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
OmpR family two-component response regulator
L3_058_000M1_scaffold_516_19
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16645..18027
DNA (1383bp) protein (461aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
putative two-component histidine kinase (EC:2.7.13.3)
Osmosensitive K+ channel histidine kinase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GVL7_9FIRM
L3_058_000M1_scaffold_516_20
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18024..18920
DNA (897bp) protein (299aa)
Germination and sporulation protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HH57_9FIRM
Germination and sporulation protein {ECO:0000313|EMBL:CDB25332.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
putative germination protein
L3_058_000M1_scaffold_516_21
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18987..19418)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GIM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB25333.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_058_000M1_scaffold_516_22
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19467..20033)
DNA (567bp) protein (189aa)
Elongation factor P n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GUB9_9FIRM
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
efp; elongation factor P
L3_058_000M1_scaffold_516_23
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20405..21478)
DNA (1074bp) protein (358aa)
proline aminopeptidase (EC:3.4.-.-)
Proline aminopeptidase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GLL0_9FIRM
Proline aminopeptidase {ECO:0000313|EMBL:CDB25335.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L3_058_000M1_scaffold_516_24
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21493..21999)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GVM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB25336.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L3_058_000M1_scaffold_516_25
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

22073..22831
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CY78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX72865.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L3_058_000M1_scaffold_516_26
Streptococcus suis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(22896..23354)
DNA (459bp) protein (153aa)
Acetyltransferase n=1 Tax=Streptococcus suis R61 RepID=G5L3F5_STRSU
Acetyltransferase {ECO:0000313|EMBL:EHC01556.1}; TaxID=996306 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus suis R61.;"
acetyltransferase
L3_058_000M1_scaffold_516_27
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

comp(23489..23674)
DNA (186bp) protein (62aa)
30S ribosomal protein S21 n=2 Tax=Firmicutes RepID=R6DBM8_9FIRM
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
rpsU; 30S ribosomal protein S21
L3_058_000M1_scaffold_516_28
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23813..26239)
DNA (2427bp) protein (809aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase n=2 Tax=root RepID=R6GUC7_9FIRM
L3_058_000M1_scaffold_516_29
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26677..27744
DNA (1068bp) protein (356aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GVN0_9FIRM
Tryptophanyl-tRNA synthetase {ECO:0000313|EMBL:CDB25346.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L3_058_000M1_scaffold_516_30

Not on your lists

27896..28219
DNA (324bp) protein (108aa)
Transcriptional regulator PadR family (Fragment) n=1 Tax=human gut metagenome RepID=K1S6J2_9ZZZZ
Transcriptional regulator PadR family {ECO:0000313|EMBL:EKC51084.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
PadR family transcriptional regulator
Displaying items 1-30 of 47 in total

View Taxonomy