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L3_058_063G1_scaffold_11

Search features with annotation key words

Displaying items 1-30 of 439 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_063G1_scaffold_11_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..105)
DNA (105bp) protein (35aa)
Reverse rubrerythrin-1 n=1 Tax=Clostridium difficile DA00273 RepID=T3XYF1_CLODI
ruberythrin
Putative rubrerythrin {ECO:0000313|EMBL:CAJ68389.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_058_063G1_scaffold_11_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(223..2046)
DNA (1824bp) protein (608aa)
ABC transporter family protein n=4 Tax=Clostridium difficile RepID=T2YXL3_CLODI
ABC transporter ATP-binding protein/permease
ABC transporter family protein {ECO:0000313|EMBL:EQG76913.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_058_063G1_scaffold_11_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2059..3834)
DNA (1776bp) protein (592aa)
ABC-type transport system, multidrug-family ATP-binding protein/permease {ECO:0000313|EMBL:CCL21594.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCL21594.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
multidrug family ABC transporter ATP-binding protein/permease (EC:3.6.3.-)
ABC transporter family protein n=7 Tax=Clostridium difficile RepID=T3SZQ6_CLODI
L3_058_063G1_scaffold_11_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4136..6355
DNA (2220bp) protein (740aa)
YhgE/Pip N-terminal domain protein n=142 Tax=Clostridium difficile RepID=T2TME6_CLODI
Putative membrane protein {ECO:0000313|EMBL:CCL21593.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
membrane protein ( phage infection protein)
L3_058_063G1_scaffold_11_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6593..6892)
DNA (300bp) protein (100aa)
Rhodanese-like domain protein n=190 Tax=Clostridium difficile RepID=T3HDZ6_CLODC
putative rhodanese-like domain-containingprotein
Rhodanese-like domain protein {ECO:0000313|EMBL:EQI85643.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_058_063G1_scaffold_11_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7099..10140
DNA (3042bp) protein (1014aa)
Beta-lactamase family protein n=18 Tax=Clostridium difficile RepID=T2ZLX1_CLODI
Putative cell surface protein penicillin-binding protein {ECO:0000313|EMBL:CDS86483.1}; Putative cell surface protein putative penicillin-binding protein {ECO:0000313|EMBL:CDS86933.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
penicillin-binding protein
L3_058_063G1_scaffold_11_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10301..11542)
DNA (1242bp) protein (414aa)
4Fe-4S binding domain protein n=174 Tax=Clostridium difficile RepID=T3HJG1_CLODC
iron-sulfur protein
4Fe-4S binding domain protein {ECO:0000313|EMBL:EQI00472.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_058_063G1_scaffold_11_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11796..14357)
DNA (2562bp) protein (854aa)
FtsX-like permease family protein n=2 Tax=Clostridium difficile RepID=T4PPL6_CLODI
ABC-type transport system, permease protein {ECO:0000313|EMBL:CCL21589.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC transporter permease
L3_058_063G1_scaffold_11_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14358..15035)
DNA (678bp) protein (226aa)
ABC transporter family protein n=172 Tax=Clostridium difficile RepID=C9XSY8_CLODC
ABC transporter ATP-binding protein
ABC transporter family protein {ECO:0000313|EMBL:EQG77608.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_058_063G1_scaffold_11_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15115..16359)
DNA (1245bp) protein (415aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
His Kinase A domain protein n=2 Tax=Clostridium difficile RepID=T4ZG54_CLODI
Two-component sensor histidine kinase
L3_058_063G1_scaffold_11_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16346..17050)
DNA (705bp) protein (235aa)
Transcriptional regulatory family protein n=176 Tax=Clostridium difficile RepID=T3HKC8_CLODC
Two-component response regulator
Transcriptional regulatory family protein {ECO:0000313|EMBL:EQG78061.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_058_063G1_scaffold_11_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17335..17781)
DNA (447bp) protein (149aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PQN4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL21585.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
uncharacterised protein
L3_058_063G1_scaffold_11_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17973..18362
DNA (390bp) protein (130aa)
Bacterial regulatory s, gntR family protein n=210 Tax=Clostridium difficile RepID=C9XSY4_CLODC
GntR family transcriptional regulator
Bacterial regulatory s, gntR family protein {ECO:0000313|EMBL:EQE66624.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_058_063G1_scaffold_11_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18355..19446
DNA (1092bp) protein (364aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PPI9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE66611.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L3_058_063G1_scaffold_11_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19566..20042
DNA (477bp) protein (159aa)
Uncharacterized protein n=196 Tax=Clostridium difficile RepID=G6B9W9_CLODI
putative phosphohydrolase, HD superfamily
HD domain protein {ECO:0000313|EMBL:EQE66592.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_058_063G1_scaffold_11_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20428..20895
DNA (468bp) protein (156aa)
Pyridoxamine 5'-phosphate oxidase family protein n=206 Tax=Clostridium difficile RepID=T2TMI5_CLODI
5-nitroimidazole reductase
Pyridoxamine 5'-phosphate oxidase family protein {ECO:0000313|EMBL:EQI85731.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_058_063G1_scaffold_11_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20955..21530)
DNA (576bp) protein (192aa)
NADPH-dependent FMN reductase family protein n=18 Tax=Clostridium difficile RepID=T2WK42_CLODI
NADPH-dependent FMN reductase family protein {ECO:0000313|EMBL:EQI00672.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
wrbA; flavoprotein
L3_058_063G1_scaffold_11_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21590..22687)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=149 Tax=Clostridium difficile RepID=U3W909_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ68322.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_058_063G1_scaffold_11_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22701..23390)
DNA (690bp) protein (230aa)
Uncharacterized protein n=169 Tax=Clostridium difficile RepID=T3HKY7_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQI85728.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_058_063G1_scaffold_11_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23555..24721)
DNA (1167bp) protein (389aa)
RNA polymerase sigma factor SigA n=213 Tax=Clostridium difficile RepID=C9XSQ7_CLODC
rpoD1; RNA polymerase sigma factor (sigma-43)
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_058_063G1_scaffold_11_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24739..26565)
DNA (1827bp) protein (609aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
DNA primase n=200 Tax=Clostridium difficile RepID=T3HHB4_CLODC
dnaG; DNA primase
L3_058_063G1_scaffold_11_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26784..27569)
DNA (786bp) protein (262aa)
aroF; Phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:CCK90250.1}; EC=2.5.1.54 {ECO:0000313|EMBL:CCK90250.1};; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=190 Tax=Clostridium difficile RepID=T3HJ61_CLODC
L3_058_063G1_scaffold_11_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27550..28056)
DNA (507bp) protein (169aa)
folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase {ECO:0000313|EMBL:CEJ98040.1}; EC=2.7.6.3 {ECO:0000313|EMBL:CEJ98040.1};; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:CKH04143.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase n=140 Tax=Clostridium difficile RepID=T3HLS6_CLODC
L3_058_063G1_scaffold_11_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28049..28414)
DNA (366bp) protein (122aa)
folB; dihydroneopterin aldolase (EC:4.1.2.25)
Dihydroneopterin aldolase n=115 Tax=Clostridium difficile RepID=C9XSQ3_CLODC
Dihydroneopterin aldolase {ECO:0000313|EMBL:EHJ28719.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_058_063G1_scaffold_11_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28425..29216)
DNA (792bp) protein (264aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Dihydropteroate synthase n=158 Tax=Clostridium difficile RepID=T3HG74_CLODC
dihydropteroate synthase
L3_058_063G1_scaffold_11_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29280..29852)
DNA (573bp) protein (191aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
GTP cyclohydrolase 1 n=217 Tax=Clostridium difficile RepID=GCH1_CLOD6
L3_058_063G1_scaffold_11_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29878..30579)
DNA (702bp) protein (234aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T3ULS7_CLODI
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG77693.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_058_063G1_scaffold_11_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30613..31356)
DNA (744bp) protein (248aa)
Aminotransferase class IV family protein n=2 Tax=Clostridium difficile RepID=T4PPJ5_CLODI
aminodeoxychorismate lyase
Aminotransferase class IV family protein {ECO:0000313|EMBL:EQG77449.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_058_063G1_scaffold_11_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31346..32695)
DNA (1350bp) protein (450aa)
Para-aminobenzoate synthase component I {ECO:0000313|EMBL:CCL21561.1}; EC=2.6.1.85 {ECO:0000313|EMBL:CCL21561.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Aminodeoxychorismate synthase, component I n=2 Tax=Clostridium difficile RepID=T4PPH4_CLODI
pabB; para-aminobenzoate synthase component I
L3_058_063G1_scaffold_11_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32697..33281)
DNA (585bp) protein (195aa)
pabA; para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II (EC:2.6.1.85 4.1.3.27)
Glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein n=6 Tax=Clostridium difficile RepID=T4AYW2_CLODI
Glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein {ECO:0000313|EMBL:EQI00659.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
Displaying items 1-30 of 439 in total

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