ggKbase home page

L3_058_063G1_scaffold_29

Search features with annotation key words

Displaying items 1-30 of 160 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_063G1_scaffold_29_1
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..4103)
DNA (4101bp) protein (1367aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XDL1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA10474.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
surface/cell-adhesion protein
L3_058_063G1_scaffold_29_2
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4341..4808)
DNA (468bp) protein (156aa)
Bacterial hemoglobin n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6R0_9FIRM
Bacterial hemoglobin {ECO:0000313|EMBL:EDQ97672.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
vhb; Bacterial hemoglobin
L3_058_063G1_scaffold_29_3
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5132..5902)
DNA (771bp) protein (257aa)
iron-chelate-transporting ATPase (EC:3.6.3.34)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6Q9_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDQ97671.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
L3_058_063G1_scaffold_29_4
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5919..6893)
DNA (975bp) protein (325aa)
Putative iron-dicitrate transporter subunit FecD n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6Q8_9FIRM
Putative iron-dicitrate transporter subunit FecD {ECO:0000313|EMBL:EDQ97670.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
ferrichrome ABC transporter permease subunit
L3_058_063G1_scaffold_29_5
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6883..7896)
DNA (1014bp) protein (338aa)
Iron chelate uptake ABC transporter, FeCT family, permease protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6Q7_9FIRM
Iron chelate uptake ABC transporter, FeCT family, permease protein {ECO:0000313|EMBL:EDQ97669.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
iron compound ABC transporter permease
L3_058_063G1_scaffold_29_6
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7928..8884)
DNA (957bp) protein (319aa)
Periplasmic binding protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6Q6_9FIRM
Periplasmic binding protein {ECO:0000313|EMBL:EDQ97668.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
yfmC; ferrichrome ABC transporter substrate-binding protein
L3_058_063G1_scaffold_29_7
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8935..9702)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6Q5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97667.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
L3_058_063G1_scaffold_29_8
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9941..11881)
DNA (1941bp) protein (647aa)
Hydrogenase, Fe-only {ECO:0000313|EMBL:EDQ97666.1}; EC=1.12.-.- {ECO:0000313|EMBL:EDQ97666.1};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
periplasmic [Fe] hydrogenase 1 (EC:1.12.7.2)
Hydrogenase, Fe-only n=2 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6Q4_9FIRM
L3_058_063G1_scaffold_29_9
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12100..12996)
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=3 Tax=Clostridium perfringens RepID=B1BN34_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:KHS58748.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
LysR family transcriptional regulator
L3_058_063G1_scaffold_29_10
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13344..14375
DNA (1032bp) protein (344aa)
Conserved hypothetical 698 family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DQX6_CLODI
Membrane protein {ECO:0000313|EMBL:KHS57047.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
hypothetical protein
L3_058_063G1_scaffold_29_11
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14620..14742)
DNA (123bp) protein (41aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI00035D3F65
RNA polymerase sigma70 factor {ECO:0000313|EMBL:KHS55753.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
RNA polymerase sigma-70 factor
L3_058_063G1_scaffold_29_12
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15305..16408)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LHW2_ACEWD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFA48492.1}; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
L3_058_063G1_scaffold_29_13
unknown

Not on your lists

comp(16440..16586)
DNA (147bp) protein (49aa)

This feature has no annotations

L3_058_063G1_scaffold_29_14
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16618..18027)
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P51 RepID=T4RR98_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADK14744.1}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
L3_058_063G1_scaffold_29_15
unknown

Not on your lists

comp(18641..18880)
DNA (240bp) protein (80aa)

This feature has no annotations

L3_058_063G1_scaffold_29_16
unknown

Not on your lists

comp(18960..19979)
DNA (1020bp) protein (340aa)

This feature has no annotations

L3_058_063G1_scaffold_29_17
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20703..21161)
DNA (459bp) protein (153aa)
SsrA-binding protein n=3 Tax=Clostridiales RepID=B0A6P2_9FIRM
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
smpB; SsrA-binding protein
L3_058_063G1_scaffold_29_18
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21308..22231)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XDR6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA10504.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L3_058_063G1_scaffold_29_19
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22381..24579)
DNA (2199bp) protein (733aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
rnr; ribonuclease R (EC:3.1.-.-)
Ribonuclease R n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6P0_9FIRM
L3_058_063G1_scaffold_29_20
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25130..25318
DNA (189bp) protein (63aa)
Ferredoxin n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XP08_9CLOT
Ferredoxin {ECO:0000313|EMBL:CDA10506.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ferredoxin
L3_058_063G1_scaffold_29_21
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25411..26100)
DNA (690bp) protein (230aa)
FCD domain protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5Y1J6_9CLOT
FCD domain protein {ECO:0000313|EMBL:CDA10507.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
transcriptional regulator
L3_058_063G1_scaffold_29_22
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26458..28125
DNA (1668bp) protein (556aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6N8_9FIRM
L3_058_063G1_scaffold_29_23
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28205..29143
DNA (939bp) protein (313aa)
Transporter, auxin efflux carrier (AEC) family protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6N7_9FIRM
Transporter, auxin efflux carrier (AEC) family protein {ECO:0000313|EMBL:EDQ97649.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
malate transporter
L3_058_063G1_scaffold_29_24
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29316..29555)
DNA (240bp) protein (80aa)
Preprotein translocase SecG subunit n=2 Tax=Clostridiales RepID=R5X6W1_9CLOT
Preprotein translocase SecG subunit {ECO:0000313|EMBL:CDA10510.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
subunit of preprotein translocase
L3_058_063G1_scaffold_29_25
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29676..30785)
DNA (1110bp) protein (370aa)
ABC-2 type transporter n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XP12_9CLOT
ABC-2 type transporter {ECO:0000313|EMBL:CDA10511.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ABC-type multidrug transport system, permease component
L3_058_063G1_scaffold_29_26
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30778..31905)
DNA (1128bp) protein (376aa)
ABC-2 type transporter n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5Y1K0_9CLOT
ABC-2 type transporter {ECO:0000313|EMBL:CDA10512.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ABC-2 type transporter
L3_058_063G1_scaffold_29_27
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32088..33380)
DNA (1293bp) protein (431aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
Enolase n=2 Tax=Clostridiales RepID=B0A7E7_9FIRM
eno; enolase
L3_058_063G1_scaffold_29_28
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33635..35161)
DNA (1527bp) protein (509aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
gpmI; 2,3-bisphosphoglycerate-independentphosphoglycer ate mutase (Phosphoglyceromutase)(BPG-independent PGAM) (iPGM) (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A7E6_9FIRM
L3_058_063G1_scaffold_29_29
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35178..35924)
DNA (747bp) protein (249aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
tpi; triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A7E5_9FIRM
L3_058_063G1_scaffold_29_30
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36005..37207)
DNA (1203bp) protein (401aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
pgk; Phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A7E4_9FIRM
Displaying items 1-30 of 160 in total

View Taxonomy