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L3_058_063G1_scaffold_194

Search features with annotation key words

Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_063G1_scaffold_194_1
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..178
DNA (177bp) protein (59aa)
50S ribosomal protein L5 n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MC46_9CLOT
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000313|EMBL:AIY81519.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L3_058_063G1_scaffold_194_2
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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413..811
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Clostridium sp. CAG:265 RepID=R6KXX3_9CLOT
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
rpsH; 30S ribosomal protein S8
L3_058_063G1_scaffold_194_3
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


882..1424
DNA (543bp) protein (181aa)
50S ribosomal protein L6 n=2 Tax=Clostridium botulinum E RepID=RL6_CLOBA
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 {ECO:0000255|HAMAP-Rule:MF_01365}; TaxID=508767 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Alaska E43 / Type E3).;"
L3_058_063G1_scaffold_194_4
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1443..1802
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=1 Tax=Clostridium colicanis 209318 RepID=N9XM52_9CLOT
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
rplR; 50S ribosomal protein L18
L3_058_063G1_scaffold_194_5
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1822..2319
DNA (498bp) protein (166aa)
30S ribosomal protein S5 n=2 Tax=environmental samples RepID=R6KUD7_9CLOT
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
rpsE; 30S ribosomal protein S5
L3_058_063G1_scaffold_194_6
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2333..2512
DNA (180bp) protein (60aa)
50S ribosomal protein L30 n=2 Tax=Clostridium RepID=K6TX22_9CLOT
rpmD; 50S ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L3_058_063G1_scaffold_194_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2534..2974
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5ML62_CLOSA
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
rplO; 50S ribosomal protein L15
L3_058_063G1_scaffold_194_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2976..4247
DNA (1272bp) protein (424aa)
Protein translocase subunit SecY n=1 Tax=Clostridium colicanis 209318 RepID=N9XXX8_9CLOT
secY; preprotein translocase, SecY subunit
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_058_063G1_scaffold_194_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4271..4918
DNA (648bp) protein (216aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Adenylate kinase n=1 Tax=Clostridium colicanis 209318 RepID=N9XM49_9CLOT
adenylate kinase family protein
L3_058_063G1_scaffold_194_10
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4918..5667
DNA (750bp) protein (250aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
map; methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H244_9CLOT
L3_058_063G1_scaffold_194_11
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6024..6242
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=14 Tax=Clostridium RepID=IF1_CLOB8
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075, ECO:0000313|EMBL:AIY79161.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L3_058_063G1_scaffold_194_12
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6286..6399
DNA (114bp) protein (38aa)
50S ribosomal protein L36 n=4 Tax=Clostridium RepID=L1QJU0_9CLOT
LSU ribosomal protein L36P
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
L3_058_063G1_scaffold_194_13
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6623..6988
DNA (366bp) protein (122aa)
30S ribosomal protein S13 n=2 Tax=environmental samples RepID=R6G0M9_9CLOT
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
rpsM; 30S ribosomal protein S13
L3_058_063G1_scaffold_194_14
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7004..7399
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FDB1_9CLOT
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
rpsK; 30S ribosomal protein S11
L3_058_063G1_scaffold_194_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7427..8047
DNA (621bp) protein (207aa)
30S ribosomal protein S4 n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FQF3_9CLOT
rpsD; ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_058_063G1_scaffold_194_16
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8150..9097
DNA (948bp) protein (316aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
rpoA; DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridium intestinale URNW RepID=U2Q8E9_9CLOT
L3_058_063G1_scaffold_194_17
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9110..9451
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H674_9CLOT
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
rplQ; 50S ribosomal protein L17
L3_058_063G1_scaffold_194_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9567..10412
DNA (846bp) protein (282aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
cobalt ABC transporter ATP-binding protein n=1 Tax=Clostridium botulinum RepID=UPI00037DB275
ABC transporter family protein
L3_058_063G1_scaffold_194_19
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10397..11254
DNA (858bp) protein (286aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
cbiO2; cobalt transporter ATP-binding protein CbiO (EC:3.6.3.-)
Cobalt import ATP-binding protein CbiO 1 n=4 Tax=Clostridium butyricum RepID=B1QYD9_CLOBU
L3_058_063G1_scaffold_194_20
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11267..12070
DNA (804bp) protein (268aa)
Energy-coupling factor transporter transmembrane protein EcfT n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CF00_9CLOT
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
cobalt transport family protein
L3_058_063G1_scaffold_194_21
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12084..12818
DNA (735bp) protein (245aa)
truA; tRNA pseudouridine(38-40) synthase (EC:5.4.99.12)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171, ECO:0000313|EMBL:AIY83113.1};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
tRNA pseudouridine synthase A n=1 Tax=Clostridium colicanis 209318 RepID=N9WCL0_9CLOT
L3_058_063G1_scaffold_194_22
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


12982..13416
DNA (435bp) protein (145aa)
50S ribosomal protein L13 n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H675_9CLOT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
rplM; 50S ribosomal protein L13
L3_058_063G1_scaffold_194_23
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13442..13834
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEC1_9CLOT
ribosomal S9/S16 family protein
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_058_063G1_scaffold_194_24
Leptotrichia goodfellowii, Leptotrichia, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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comp(13971..14993)
DNA (1023bp) protein (341aa)
Site-specific recombinase, phage integrase family n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GLJ2_9FUSO
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EEY35066.1}; TaxID=596323 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Leptotrichia.;" source="Leptotrichia goodfellowii F0264.;"
integrase
L3_058_063G1_scaffold_194_25
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15098..15589)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Clostridium botulinum RepID=UPI000306E42E
Zn peptidase {ECO:0000313|EMBL:KIL06622.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
hypothetical protein
L3_058_063G1_scaffold_194_26
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15691..16002)
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PR69_CLOSD
Uncharacterized protein {ECO:0000313|EMBL:KEI08146.1}; TaxID=1443122 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi B str. NCTC 9691.;"
hypothetical protein
L3_058_063G1_scaffold_194_27
Halanaerobium hydrogeniformans, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16021..17937)
DNA (1917bp) protein (639aa)
Type III restriction protein res subunit n=1 Tax=Halanaerobium hydrogeniformans RepID=E4RPM6_HALHG
type III restriction protein res subunit
Type III restriction protein res subunit {ECO:0000313|EMBL:ADQ14049.1}; TaxID=656519 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halanaerobium.;" source="Halanaerobium hydrogeniformans (Halanaerobium sp. (strain; sapolanicus)).;"
L3_058_063G1_scaffold_194_28
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18098..19159)
DNA (1062bp) protein (354aa)
Type I restriction enzyme HsdR protein N-terminal domain protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XPT2_9FIRM
Endonuclease {ECO:0000313|EMBL:KIL06619.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
hypothetical protein
L3_058_063G1_scaffold_194_29
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19296..19622)
DNA (327bp) protein (109aa)
DNA-binding protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MIW3_9CLOT
DNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:AGF54771.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_058_063G1_scaffold_194_30
Thermoanaerobacter sp. X514, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

19780..19965
DNA (186bp) protein (62aa)
Transcriptional regulator, XRE family n=3 Tax=Thermoanaerobacter RepID=B0K4S1_THEPX
helix-turn-helix domain-containing protein
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABY92010.1}; TaxID=399726 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter.;" source="Thermoanaerobacter sp. (strain X514).;"
Displaying items 1-30 of 93 in total

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