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L3_058_072G1_scaffold_1028

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_072G1_scaffold_1028_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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415..969
DNA (555bp) protein (185aa)
Protein YrdA n=34 Tax=Escherichia coli RepID=F4T4G4_ECOLX
yrdA; hypothetical protein
Carbonic anhydrase, family 3 {ECO:0000313|EMBL:CDL47347.1}; TaxID=1432559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC41.;"
L3_058_072G1_scaffold_1028_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(945..1202)
DNA (258bp) protein (86aa)
Uncharacterized protein n=39 Tax=Escherichia coli RepID=D2NB65_ECOS5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJO85338.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L3_058_072G1_scaffold_1028_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1199..2017)
DNA (819bp) protein (273aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|SAAS:SAAS00228653}; EC=1.1.1.25 {ECO:0000256|SAAS:SAAS00216361};; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
Shikimate dehydrogenase n=37 Tax=Escherichia coli RepID=D2NB66_ECOS5
dehydroshikimate reductase
L3_058_072G1_scaffold_1028_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2022..2594)
DNA (573bp) protein (191aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012127}; Short=TC-AMP synthase {ECO:0000256|HAMAP-Rule:MF_01852};; EC=2.7.7.87 {ECO:0000256|HAMAP-Rule:MF_01852, ECO:0000256|SAAS:SAAS00012122};; L-threonylcarbamoyladenylate synthase {ECO:0000256|HAMAP-Rule:MF_01852}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaC {ECO:0000256|HAMAP-Rule:MF_01852}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaC {ECO:0000256|HAMAP-Rule:MF_01852}; TaxID=656417 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M605.;"
Threonylcarbamoyl-AMP synthase n=169 Tax=Escherichia coli RepID=TSAC_ECOL6
yrdC; Ptative ribosome maturation factor
L3_058_072G1_scaffold_1028_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2599..3141)
DNA (543bp) protein (181aa)
DNA topoisomerase n=29 Tax=Escherichia coli RepID=L2ZD90_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDN84021.1}; YrdD protein; TaxID=1359206 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ST131.;"
L3_058_072G1_scaffold_1028_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3170..3643)
DNA (474bp) protein (158aa)
Protein Smg n=56 Tax=Escherichia coli RepID=D2NB69_ECOS5
hypothetical protein
Protein Smg {ECO:0000256|HAMAP-Rule:MF_00598}; TaxID=431946 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O150:H5 (strain SE15).;"
L3_058_072G1_scaffold_1028_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3615..4739)
DNA (1125bp) protein (375aa)
Protein smf n=127 Tax=Escherichia coli RepID=E2QFE2_ECOLX
hypothetical protein
DNA protecting protein DprA {ECO:0000313|EMBL:KEJ55062.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
L3_058_072G1_scaffold_1028_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4869..5378
DNA (510bp) protein (170aa)
peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1280986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 36 (4-5675286).;"
Peptide deformylase n=1173 Tax=Enterobacteriaceae RepID=DEF_ECO27
L3_058_072G1_scaffold_1028_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5393..6340
DNA (948bp) protein (316aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase {ECO:0000255|HAMAP-Rule:MF_00182}; EC=2.1.2.9 {ECO:0000255|HAMAP-Rule:MF_00182};; TaxID=585397 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O81 (strain ED1a).;"
Methionyl-tRNA formyltransferase n=180 Tax=Escherichia RepID=FMT_ECO45
L3_058_072G1_scaffold_1028_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6392..7681
DNA (1290bp) protein (430aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|HAMAP-Rule:MF_01856, ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.176 {ECO:0000256|HAMAP-Rule:MF_01856, ECO:0000256|SAAS:SAAS00011820};; 16S rRNA m5C967 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01856}; rRNA (cytosine-C(5)-)-methyltransferase RsmB {ECO:0000256|HAMAP-Rule:MF_01856}; TaxID=1359206 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ST131.;"
Ribosomal RNA small subunit methyltransferase B n=36 Tax=Escherichia coli RepID=D2NB73_ECOS5
16S rRNA methyltransferase
L3_058_072G1_scaffold_1028_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7703..9079
DNA (1377bp) protein (459aa)
Trk system potassium uptake protein TrkA n=1353 Tax=Enterobacteriaceae RepID=TRKA_ECO57
trkA; potassium transporter peripheral membrane protein
Trk system potassium uptake protein trkA {ECO:0000313|EMBL:EGP23379.1}; TaxID=1001989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli PCN033.;"
L3_058_072G1_scaffold_1028_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9209..9622
DNA (414bp) protein (138aa)
Large-conductance mechanosensitive channel n=371 Tax=Escherichia RepID=MSCL_ECO45
mscL; large-conductance mechanosensitive channel
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1181728 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE182.;"
L3_058_072G1_scaffold_1028_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9619..9837)
DNA (219bp) protein (73aa)
Uncharacterized protein yhdL n=360 Tax=Escherichia RepID=E2QFE8_ECOLX
yhdL; hypothetical protein
Alternative ribosome-rescue factor {ECO:0000313|EMBL:EQP45030.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
L3_058_072G1_scaffold_1028_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9893..10318)
DNA (426bp) protein (142aa)
HTH-type transcriptional regulator zntR n=355 Tax=Escherichia RepID=E2QFE9_ECOLX
zntR; zinc-responsive transcriptional regulator
HTH-type transcriptional regulator zntR {ECO:0000313|EMBL:EOW93232.1}; TaxID=1181728 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE182.;"
L3_058_072G1_scaffold_1028_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10329..10697)
DNA (369bp) protein (123aa)
Uncharacterized protein yhdN n=349 Tax=Escherichia RepID=E2QFF0_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EOW93233.1}; TaxID=1181728 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE182.;"
L3_058_072G1_scaffold_1028_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10804..10965)
DNA (162bp) protein (54aa)
50S ribosomal protein L17 n=1 Tax=Enterobacter cloacae UCICRE 12 RepID=V3CWE9_ENTCL
rplQ; 50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1281237 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3304-1.;"
Displaying 16 items

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