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L3_058_072G1_scaffold_411

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_072G1_scaffold_411_1
Clostridium phage phiCD505, Caudovirales, Viruses

Not on your lists

comp(40..177)
DNA (138bp) protein (46aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T4NPV6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CEK40655.1}; TaxID=1582154 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Clostridium phage phiCD505.;"
phage protein
L3_058_072G1_scaffold_411_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(178..477)
DNA (300bp) protein (100aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T4NQ05_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE72225.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L3_058_072G1_scaffold_411_3
unknown

Not on your lists

comp(505..1779)
DNA (1275bp) protein (425aa)
SMP-30/Gluconolaconase/LRE-like region family protein n=3 Tax=Clostridium difficile RepID=T4NPD7_CLODI
L3_058_072G1_scaffold_411_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1794..1985)
DNA (192bp) protein (64aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T4NPK5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQI94761.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
hypothetical protein
L3_058_072G1_scaffold_411_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2019..2189)
DNA (171bp) protein (57aa)
Uncharacterized protein n=14 Tax=Clostridium difficile RepID=T2ZRU1_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS92647.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_058_072G1_scaffold_411_6
Clostridium phage phiC2, PhiCD119likevirus, Caudovirales, Viruses

Not on your lists

comp(2201..2548)
DNA (348bp) protein (116aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T4NPV1_CLODI
Putative uncharacterized protein {ECO:0000313|EMBL:ABE99490.1}; TaxID=262071 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Clostridium phage phiC2.;"
putative phage protein
L3_058_072G1_scaffold_411_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2568..4214)
DNA (1647bp) protein (549aa)
Glycine rich family protein n=3 Tax=Clostridium difficile RepID=T4NQ03_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ27748.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
putative phage protein
L3_058_072G1_scaffold_411_8
Clostridium phage phiC2, PhiCD119likevirus, Caudovirales, Viruses

Not on your lists

comp(4229..5254)
DNA (1026bp) protein (342aa)
Phage tail-collar fiber family protein n=2 Tax=Clostridium difficile RepID=T4PMU8_CLODI
Putative tail fiber protein {ECO:0000313|EMBL:ABE99489.1}; TaxID=262071 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Clostridium phage phiC2.;"
phage tail fiber protein
L3_058_072G1_scaffold_411_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5266..5883)
DNA (618bp) protein (206aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T4PNJ6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ27746.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
phage protein
L3_058_072G1_scaffold_411_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5876..6913)
DNA (1038bp) protein (346aa)
Baseplate J-like family protein n=4 Tax=Clostridium difficile RepID=T4PMI7_CLODI
phage tail protein
Putative phage tail protein {ECO:0000313|EMBL:CBE04024.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_058_072G1_scaffold_411_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6926..7345)
DNA (420bp) protein (140aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PML9_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQI88193.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
putative phage protein
L3_058_072G1_scaffold_411_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7350..7610)
DNA (261bp) protein (87aa)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T4PGL4_CLODI
Phage protein {ECO:0000313|EMBL:CDS85299.1}; Putative phage protein {ECO:0000313|EMBL:CDS84857.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
phage protein
L3_058_072G1_scaffold_411_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7624..9516)
DNA (1893bp) protein (631aa)
NlpC/P60 family protein n=2 Tax=Clostridium difficile RepID=T4PMU4_CLODI
NlpC/P60 family protein {ECO:0000313|EMBL:EQI88191.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
phage cell wall hydrolase
L3_058_072G1_scaffold_411_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9509..10198)
DNA (690bp) protein (230aa)
LysM domain protein n=3 Tax=Clostridium difficile RepID=G6BAJ5_CLODI
LysM domain protein {ECO:0000313|EMBL:EHJ27741.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
phage cell wall hydrolase
L3_058_072G1_scaffold_411_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10215..12566)
DNA (2352bp) protein (784aa)
Tape measure domain protein n=10 Tax=Clostridium difficile RepID=T3I2M9_CLODI
Putative phage tail tape measure protein {ECO:0000313|EMBL:CDT82643.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
putative phage tail tape measure protein
L3_058_072G1_scaffold_411_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12629..13405)
DNA (777bp) protein (259aa)
Short C-terminal domain protein n=11 Tax=Clostridium difficile RepID=T2VN68_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDT82637.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L3_058_072G1_scaffold_411_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13535..13684)
DNA (150bp) protein (50aa)
Uncharacterized protein n=11 Tax=Clostridium difficile RepID=T2VKL5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS85290.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_058_072G1_scaffold_411_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13684..14514)
DNA (831bp) protein (277aa)
Prophage antirepressor-related protein n=1 Tax=Clostridium difficile CD002 RepID=U3VZW6_CLODI
Toxin-antitoxin system, toxin component, Bro domain protein {ECO:0000313|EMBL:EHJ25372.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
prophage antirepressor-related protein
L3_058_072G1_scaffold_411_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14638..14805)
DNA (168bp) protein (56aa)
Ribbon-helix-helix , copG family protein n=15 Tax=Clostridium difficile RepID=T2XFW8_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL00357.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
hypothetical protein
L3_058_072G1_scaffold_411_20
unknown

Not on your lists

comp(15423..15572)
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Clostridium difficile CD113 RepID=T4YCJ3_CLODI
L3_058_072G1_scaffold_411_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16969..17073)
DNA (105bp) protein (35aa)
Uncharacterised protein {ECO:0000313|EMBL:CKG89584.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_058_072G1_scaffold_411_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17414..17575)
DNA (162bp) protein (54aa)
Uncharacterized protein n=10 Tax=Clostridium difficile RepID=G6BAI6_CLODI
hypothetical protein
Putative phage protein {ECO:0000313|EMBL:CAJ69798.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_058_072G1_scaffold_411_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17722..17841)
DNA (120bp) protein (40aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PS47_CLODI
putative phage protein
ABC-type transport system,ATP-binding protein {ECO:0000313|EMBL:CEJ99519.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_058_072G1_scaffold_411_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17916..18356)
DNA (441bp) protein (147aa)
Phage protein n=83 Tax=Clostridium difficile RepID=C9XSR5_CLODC
phage protein
Putative XkdN-like phage protein {ECO:0000313|EMBL:CCL29012.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_058_072G1_scaffold_411_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18428..18898)
DNA (471bp) protein (157aa)
Phage-like element PBSX protein xkdM n=70 Tax=Clostridium difficile RepID=T2U9T5_CLODI
putative phage protein
Phage-like element PBSX protein xkdM {ECO:0000313|EMBL:EQG76040.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_058_072G1_scaffold_411_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18915..20225)
DNA (1311bp) protein (437aa)
Phage tail sheath family protein n=2 Tax=Clostridium difficile RepID=T4PSF2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ27728.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
putative phage protein
L3_058_072G1_scaffold_411_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20226..20411)
DNA (186bp) protein (62aa)
Putative phage protein n=1 Tax=Clostridium difficile E13 RepID=U3VTT7_CLODI
Putative phage protein {ECO:0000313|EMBL:CCL00900.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
putative phage protein
L3_058_072G1_scaffold_411_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20395..20832)
DNA (438bp) protein (146aa)
Putative phage protein n=2 Tax=Clostridium difficile RepID=T4PS51_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ25482.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
putative phage protein
L3_058_072G1_scaffold_411_29
Clostridium phage CDMH1, Caudovirales, Viruses

Not on your lists

comp(20825..21250)
DNA (426bp) protein (142aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PS68_CLODI
Putative tail protein {ECO:0000313|EMBL:CDI66631.1}; TaxID=1411095 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae.;" source="Clostridium phage CDMH1.;"
putative phage protein
L3_058_072G1_scaffold_411_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21250..21597)
DNA (348bp) protein (116aa)
Uncharacterized protein n=55 Tax=Clostridium difficile RepID=G6BAT8_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ27724.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Displaying items 1-30 of 62 in total

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