ggKbase home page

L3_058_072G1_scaffold_611

Search features with annotation key words

Displaying items 1-30 of 75 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_072G1_scaffold_611_1
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..193
DNA (192bp) protein (64aa)
Cupin domain protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5Y1B5_9CLOT
Cupin domain protein {ECO:0000313|EMBL:CDA10457.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
4-carboxymuconolactone decarboxylase
L3_058_072G1_scaffold_611_2
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

251..472
DNA (222bp) protein (74aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5XNT2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA10456.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
L3_058_072G1_scaffold_611_3
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(547..876)
DNA (330bp) protein (110aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A6T0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA10455.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
5'-nucleotidase
L3_058_072G1_scaffold_611_4
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1046..1687
DNA (642bp) protein (214aa)
Antioxidant, AhpC/TSA family n=2 Tax=Clostridiales RepID=B0A6T1_9FIRM
Antioxidant AhpC/TSA family {ECO:0000313|EMBL:CDA10454.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
putative thioredoxin
L3_058_072G1_scaffold_611_5
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1680..1829
DNA (150bp) protein (50aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A6T2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA10453.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L3_058_072G1_scaffold_611_6
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1811..2755
DNA (945bp) protein (315aa)
4Fe-4S binding domain protein n=3 Tax=Clostridiales RepID=B0A6T3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETI94353.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
iron-sulfur cluster-binding protein
L3_058_072G1_scaffold_611_7
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2848..3531
DNA (684bp) protein (228aa)
Response regulator receiver domain protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6T4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETI94352.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
two-component DNA-binding response regulator
L3_058_072G1_scaffold_611_8
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3531..4991
DNA (1461bp) protein (487aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridiales RepID=B0A6T5_9FIRM
hypothetical protein
L3_058_072G1_scaffold_611_9
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5304..6653
DNA (1350bp) protein (450aa)
Putative permease n=2 Tax=Clostridiales RepID=R5XDI8_9CLOT
Putative permease {ECO:0000313|EMBL:CDA10449.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
xanthine permease
L3_058_072G1_scaffold_611_10
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6767..7735
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6T7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97699.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
conserved hypothetical protein
L3_058_072G1_scaffold_611_11
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8058..9800)
DNA (1743bp) protein (581aa)
ABC transporter related n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5Y1A6_9CLOT
ABC transporter related {ECO:0000313|EMBL:CDA10447.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ABC transporter
L3_058_072G1_scaffold_611_12
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9965..10951
DNA (987bp) protein (329aa)
cbh; Choloylglycine hydrolase (EC:3.5.1.24)
Choloylglycine hydrolase n=2 Tax=Clostridiales RepID=B0A6U0_9FIRM
Choloylglycine hydrolase {ECO:0000313|EMBL:CDA10446.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
L3_058_072G1_scaffold_611_13
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11214..12224
DNA (1011bp) protein (337aa)
Serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6U1_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EDQ97703.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
L3_058_072G1_scaffold_611_14

Not on your lists

comp(12297..13217)
DNA (921bp) protein (307aa)
AraC family transcriptional regulator n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G020_CLOPA
Helix-turn-helix-domain containing protein, AraC type {ECO:0000313|EMBL:ETJ17926.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
helix-turn-helix domain-containing protein
L3_058_072G1_scaffold_611_15

Not on your lists

13401..14369
DNA (969bp) protein (323aa)
Permease DMT family n=1 Tax=Clostridium sp. CAG:221 RepID=R6FQW3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ETJ17927.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
protein of unknown function DUF6 transmembrane
L3_058_072G1_scaffold_611_16

Not on your lists

14607..15002
DNA (396bp) protein (132aa)
Uncharacterized conserved protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JKR5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ17928.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_058_072G1_scaffold_611_17

Not on your lists

15097..15699
DNA (603bp) protein (201aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WNE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ17929.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_058_072G1_scaffold_611_18

Not on your lists

15776..16210
DNA (435bp) protein (145aa)
Transcriptional regulator n=1 Tax=Roseburia sp. CAG:182 RepID=R7QWX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ17930.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_058_072G1_scaffold_611_19

Not on your lists

16319..17092
DNA (774bp) protein (258aa)
Macro domain protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ETF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ17931.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1
L3_058_072G1_scaffold_611_20

Not on your lists

17043..17912
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RK56_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ17932.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_058_072G1_scaffold_611_21
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18087..18821
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XDI2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA10444.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
cell surface protein
L3_058_072G1_scaffold_611_22
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19024..21504
DNA (2481bp) protein (827aa)
UPI0003D63FC6 related cluster n=1 Tax=unknown RepID=UPI0003D63FC6
Uncharacterized protein {ECO:0000313|EMBL:ETI94303.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
ATP-dependent transcriptional regulator
L3_058_072G1_scaffold_611_23
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21631..21963
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A6U4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA10442.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L3_058_072G1_scaffold_611_24

Not on your lists

22145..22483
DNA (339bp) protein (113aa)
cupin n=1 Tax=Clostridium sp. JC122 RepID=UPI00028A30EE
Cupin 2, conserved barrel protein {ECO:0000313|EMBL:ETJ19893.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
cupin 2 domain-containing protein
L3_058_072G1_scaffold_611_25

Not on your lists

22487..22825
DNA (339bp) protein (113aa)
cupin n=1 Tax=Clostridium sp. JC122 RepID=UPI000287E98B
Cupin 2, conserved barrel protein {ECO:0000313|EMBL:ETJ19892.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
cupin 2 domain-containing protein
L3_058_072G1_scaffold_611_26
unknown

Not on your lists

comp(23297..23878)
DNA (582bp) protein (194aa)

This feature has no annotations

L3_058_072G1_scaffold_611_27
Staphylococcus carnosus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24138..24908
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Polaribacter franzmannii RepID=UPI0003645D3E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL29353.1}; TaxID=396513 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus carnosus (strain TM300).;"
L3_058_072G1_scaffold_611_28
unknown

Not on your lists

25014..25535
DNA (522bp) protein (174aa)

This feature has no annotations

L3_058_072G1_scaffold_611_29
Leptospira interrogans, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

25554..26081
DNA (528bp) protein (176aa)
Transferase hexapeptide repeat protein n=1 Tax=Leptospira interrogans serovar Hebdomadis str. R499 RepID=K8JJJ7_LEPIR
Transferase hexapeptide repeat protein {ECO:0000313|EMBL:EMJ33928.1}; TaxID=1193040 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira interrogans str. FPW1039.;"
cysE; serine acetyltransferase
L3_058_072G1_scaffold_611_30

Not on your lists

26187..26312
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6V1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ38079.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Displaying items 1-30 of 75 in total

View Taxonomy