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L3_058_072G1_scaffold_631

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_072G1_scaffold_631_1
unknown

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comp(3..128)
DNA (126bp) protein (42aa)

This feature has no annotations

L3_058_072G1_scaffold_631_2
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(205..2139)
DNA (1935bp) protein (645aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=2 Tax=Clostridium symbiosum RepID=E9SPN6_CLOSY
L3_058_072G1_scaffold_631_3
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2167..2649)
DNA (483bp) protein (161aa)
Transcription elongation factor GreA n=4 Tax=Clostridium RepID=E7GPV2_CLOSY
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
transcription elongation factor GreA
L3_058_072G1_scaffold_631_4
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2783..3742)
DNA (960bp) protein (320aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
tRNA-dihydrouridine synthase n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2D5N7_CLOSY
tRNA-U20-dihydrouridine synthase
L3_058_072G1_scaffold_631_5
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3739..4137)
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GPV0_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93210.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L3_058_072G1_scaffold_631_6
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4243..5217)
DNA (975bp) protein (325aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=4 Tax=Clostridium RepID=E7GPU9_CLOSY
L3_058_072G1_scaffold_631_7
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5441..8923)
DNA (3483bp) protein (1161aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5F770_9CLOT
L3_058_072G1_scaffold_631_8
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9022..9276)
DNA (255bp) protein (85aa)
Phosphocarrier protein HPr n=4 Tax=Clostridium RepID=E7GPU7_CLOSY
Phosphocarrier, HPr family {ECO:0000313|EMBL:ERI74855.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Phosphotransferase System HPr (HPr) Family
L3_058_072G1_scaffold_631_9
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9376..10329)
DNA (954bp) protein (318aa)
Putative sporulation transcription regulator WhiA n=3 Tax=Clostridium RepID=E7GPU6_CLOSY
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L3_058_072G1_scaffold_631_10
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10359..11234)
DNA (876bp) protein (292aa)
UPF0042 nucleotide-binding protein HMPREF9474_02940 n=2 Tax=Clostridium RepID=E7GPU5_CLOSY
Nucleotide-binding protein HMPREF9474_02940 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Predicted P-loop-containing kinase
L3_058_072G1_scaffold_631_11
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11286..12200)
DNA (915bp) protein (305aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=2 Tax=Clostridium RepID=U2BSQ3_CLOSY
L3_058_072G1_scaffold_631_12
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12239..13165)
DNA (927bp) protein (309aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
HPr kinase/phosphorylase n=2 Tax=Clostridium symbiosum RepID=E7GPU3_CLOSY
HPr kinase
L3_058_072G1_scaffold_631_13
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13270..15180)
DNA (1911bp) protein (637aa)
UvrABC system protein C n=4 Tax=Clostridium RepID=G5F764_9CLOT
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
excinuclease ABC, C subunit
L3_058_072G1_scaffold_631_14
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15152..15736)
DNA (585bp) protein (195aa)
PKD protein n=3 Tax=Clostridium symbiosum RepID=E7GPU1_CLOSY
PKD protein {ECO:0000313|EMBL:EGA93201.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Protein of unknown function (DUF1653).
L3_058_072G1_scaffold_631_15
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15733..16965)
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SPM3_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI74862.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L3_058_072G1_scaffold_631_16
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16965..17462)
DNA (498bp) protein (166aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
methylated-DNA--protein-cysteine methyltransferase (EC:2.1.1.63)
Methylated-DNA--protein-cysteine methyltransferase n=2 Tax=Clostridium RepID=E7GPT9_CLOSY
L3_058_072G1_scaffold_631_17
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17935..19413
DNA (1479bp) protein (493aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=E9SPM1_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA93198.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L3_058_072G1_scaffold_631_18
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19531..21594)
DNA (2064bp) protein (688aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Clostridium RepID=E9SPM0_CLOSY
L3_058_072G1_scaffold_631_19
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22039..22539
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2D036_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI74827.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
G:T/U mismatch-specific DNA glycosylase
L3_058_072G1_scaffold_631_20
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22692..22910
DNA (219bp) protein (73aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=E9SPL8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF07761.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L3_058_072G1_scaffold_631_21
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22911..23237)
DNA (327bp) protein (109aa)
Branched-chain amino acid transporter AzlD n=3 Tax=Clostridium symbiosum RepID=E7GPT4_CLOSY
Branched-chain amino acid transport protein AzlD {ECO:0000313|EMBL:ERI74830.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Predicted branched-chain amino acid permeases (azaleucine resistance)
L3_058_072G1_scaffold_631_22
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23234..23956)
DNA (723bp) protein (241aa)
Branched-chain amino acid transporter AzlC n=2 Tax=Clostridium RepID=E7GPT3_CLOSY
Branched-chain amino acid transporter AzlC {ECO:0000313|EMBL:EGA93193.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Predicted branched-chain amino acid permease (azaleucine resistance)
L3_058_072G1_scaffold_631_23
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24128..25069
DNA (942bp) protein (314aa)
Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins (EC:1.97.1.4)
Radical SAM domain protein n=2 Tax=Clostridium RepID=U2D1V2_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF07758.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Displaying 23 items

View Taxonomy