ggKbase home page

L3_058_072G1_scaffold_869

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_072G1_scaffold_869_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..132)
DNA (132bp) protein (44aa)
Small GTP-binding domain protein n=1 Tax=Clostridium difficile CD212 RepID=T3HSY2_CLODI
elongation factor Tu
Elongation factor Tu {ECO:0000256|RuleBase:RU004061}; Flags: Fragment;; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_058_072G1_scaffold_869_2
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(194..856)
DNA (663bp) protein (221aa)
RNA polymerase sigma-H factor n=2 Tax=Clostridiales RepID=B0A692_9FIRM
RNA polymerase sigma-H factor {ECO:0000313|EMBL:EDQ97986.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
sigH; RNA polymerase factor sigma-70
L3_058_072G1_scaffold_869_3

Not on your lists

comp(918..1448)
DNA (531bp) protein (177aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A691_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ16893.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_058_072G1_scaffold_869_4
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1448..2194)
DNA (747bp) protein (249aa)
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A690_9FIRM
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:EDQ97984.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
tRNA/rRNA methyltransferase
L3_058_072G1_scaffold_869_5
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2195..2953)
DNA (759bp) protein (253aa)
Thymidylate synthase ThyX {ECO:0000256|HAMAP-Rule:MF_01408}; Short=TS {ECO:0000256|HAMAP-Rule:MF_01408};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_01408};; EC=2.1.1.148 {ECO:0000256|HAMAP-Rule:MF_01408};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
thyX; Thymidylate synthase thyX (TS) (TSase) (EC:2.1.1.148)
Thymidylate synthase ThyX n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A689_9FIRM
L3_058_072G1_scaffold_869_6
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3140..3553)
DNA (414bp) protein (138aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
Mini-ribonuclease 3 n=2 Tax=Clostridiales RepID=B0A688_9FIRM
hypothetical protein
L3_058_072G1_scaffold_869_7

Not on your lists

comp(3538..4938)
DNA (1401bp) protein (467aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5Y4A6_9CLOT
Cysteine-tRNA ligase {ECO:0000313|EMBL:ETJ16889.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_058_072G1_scaffold_869_8
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5186..6001)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5X769_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA11493.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
putative membrane protein
L3_058_072G1_scaffold_869_9
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6004..6708)
DNA (705bp) protein (235aa)
Putative RNA polymerase sigma factor SigI n=2 Tax=Clostridium bartlettii DSM 16795 RepID=B0A685_9FIRM
Putative RNA polymerase sigma factor SigI {ECO:0000313|EMBL:EDQ97979.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
putative RNA polymerase sigma-I factor
L3_058_072G1_scaffold_869_10
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6809..7600)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A684_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97978.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
L3_058_072G1_scaffold_869_11
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7597..8397)
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A683_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97977.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
hypothetical protein
L3_058_072G1_scaffold_869_12
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8414..9073)
DNA (660bp) protein (220aa)
UPI0003D66BDB related cluster n=1 Tax=unknown RepID=UPI0003D66BDB
Uncharacterized protein {ECO:0000313|EMBL:ETI94543.1}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DORA_8_9.;"
antibiotic ABC transporter ATP-binding protein
L3_058_072G1_scaffold_869_13
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9092..9910)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A681_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97975.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
L3_058_072G1_scaffold_869_14
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9996..10688)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A680_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97974.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
hypothetical protein
L3_058_072G1_scaffold_869_15
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10681..11226)
DNA (546bp) protein (182aa)
Sigma-70 region 2 n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A679_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:EDQ97973.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
ECF family RNA polymerase sigma-24 subunit
L3_058_072G1_scaffold_869_16
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11245..11373)
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A678_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97972.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
L3_058_072G1_scaffold_869_17
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11548..12402
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A677_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97971.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
L3_058_072G1_scaffold_869_18
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12488..13168)
DNA (681bp) protein (227aa)
HAD hydrolase, family IA, variant 3 n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A676_9FIRM
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EDQ97970.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_058_072G1_scaffold_869_19
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13208..13894)
DNA (687bp) protein (229aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A675_9FIRM
L3_058_072G1_scaffold_869_20

Not on your lists

comp(13851..14690)
DNA (840bp) protein (280aa)
thiM; hydroxyethylthiazole kinase ThiM (EC:2.7.1.50)
Hydroxyethylthiazole kinase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A674_9FIRM
Hydroxyethylthiazole kinase 1 {ECO:0000313|EMBL:ETJ17059.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_058_072G1_scaffold_869_21

Not on your lists

comp(14693..15001)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A673_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ17058.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_058_072G1_scaffold_869_22

Not on your lists

comp(15155..15292)
DNA (138bp) protein (46aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0A672_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ17392.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_058_072G1_scaffold_869_23

Not on your lists

15518..15946
DNA (429bp) protein (143aa)
queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase QueD (EC:4.1.2.50)
6-carboxy-5,6,7,8-tetrahydropterin synthase n=2 Tax=Clostridiales RepID=B0A670_9FIRM
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000313|EMBL:ETJ17056.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_058_072G1_scaffold_869_24

Not on your lists

15948..16178
DNA (231bp) protein (77aa)
7-carboxy-7-deazaguanine synthase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A669_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ17055.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
radical SAM domain-containing protein
L3_058_072G1_scaffold_869_25

Not on your lists

16141..16524
DNA (384bp) protein (128aa)
queE; 7-carboxy-7-deazaguanine synthase QueE (EC:4.3.99.3)
7-carboxy-7-deazaguanine synthase n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XRW5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ETJ17055.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_058_072G1_scaffold_869_26
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16574..17248
DNA (675bp) protein (225aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
queC; 7-cyano-7-deazaguanine synthase (EC:6.3.4.20)
7-cyano-7-deazaguanine synthase n=3 Tax=Clostridiales RepID=B0A668_9FIRM
L3_058_072G1_scaffold_869_27

Not on your lists

17265..17768
DNA (504bp) protein (168aa)
queF; NADPH-dependent 7-cyano-7-deazaguanine reductase QueF (EC:1.7.1.13)
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A667_9FIRM
NADPH-dependent 7-cyano-7-deazaguanine reductase {ECO:0000313|EMBL:ETJ17053.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_058_072G1_scaffold_869_28
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17877..19520)
DNA (1644bp) protein (548aa)
Amidohydrolase family protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A666_9FIRM
Amidohydrolase family protein {ECO:0000313|EMBL:EDQ97960.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
amidohydrolase 3
L3_058_072G1_scaffold_869_29
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19545..20933)
DNA (1389bp) protein (463aa)
Amino acid permease n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5X9N0_9CLOT
Amino acid permease {ECO:0000313|EMBL:CDA11505.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
amino acid permease
L3_058_072G1_scaffold_869_30

Not on your lists

21229..22728
DNA (1500bp) protein (500aa)
UPF0061 protein CLOBAR_00047 n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A664_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ17153.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
Displaying items 1-30 of 37 in total

View Taxonomy