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L3_058_072G1_scaffold_993

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_072G1_scaffold_993_1
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..4103)
DNA (4101bp) protein (1367aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XDL1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA10474.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
surface/cell-adhesion protein
L3_058_072G1_scaffold_993_2
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4341..4808)
DNA (468bp) protein (156aa)
Bacterial hemoglobin n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6R0_9FIRM
Bacterial hemoglobin {ECO:0000313|EMBL:EDQ97672.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
vhb; Bacterial hemoglobin
L3_058_072G1_scaffold_993_3
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5132..5902)
DNA (771bp) protein (257aa)
iron-chelate-transporting ATPase (EC:3.6.3.34)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6Q9_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDQ97671.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
L3_058_072G1_scaffold_993_4
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5919..6893)
DNA (975bp) protein (325aa)
Putative iron-dicitrate transporter subunit FecD n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6Q8_9FIRM
Putative iron-dicitrate transporter subunit FecD {ECO:0000313|EMBL:EDQ97670.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
ferrichrome ABC transporter permease subunit
L3_058_072G1_scaffold_993_5
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6883..7896)
DNA (1014bp) protein (338aa)
Iron chelate uptake ABC transporter, FeCT family, permease protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6Q7_9FIRM
Iron chelate uptake ABC transporter, FeCT family, permease protein {ECO:0000313|EMBL:EDQ97669.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
iron compound ABC transporter permease
L3_058_072G1_scaffold_993_6
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7928..8884)
DNA (957bp) protein (319aa)
Periplasmic binding protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6Q6_9FIRM
Periplasmic binding protein {ECO:0000313|EMBL:EDQ97668.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
yfmC; ferrichrome ABC transporter substrate-binding protein
L3_058_072G1_scaffold_993_7
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8938..9702)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6Q5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDQ97667.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
L3_058_072G1_scaffold_993_8
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9941..11860)
DNA (1920bp) protein (640aa)
Hydrogenase, Fe-only {ECO:0000313|EMBL:EDQ97666.1}; EC=1.12.-.- {ECO:0000313|EMBL:EDQ97666.1};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
periplasmic [Fe] hydrogenase 1 (EC:1.12.7.2)
Hydrogenase, Fe-only n=2 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6Q4_9FIRM
L3_058_072G1_scaffold_993_9
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12030..12926)
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=3 Tax=Clostridium perfringens RepID=B1BN34_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:KHS58748.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
LysR family transcriptional regulator
L3_058_072G1_scaffold_993_10
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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13274..14305
DNA (1032bp) protein (344aa)
Conserved hypothetical 698 family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DQX6_CLODI
Membrane protein {ECO:0000313|EMBL:KHS57047.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
hypothetical protein
L3_058_072G1_scaffold_993_11
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14556..14672)
DNA (117bp) protein (39aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI00035D3F65
RNA polymerase sigma70 factor {ECO:0000313|EMBL:KHS55753.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
RNA polymerase sigma-70 factor
L3_058_072G1_scaffold_993_12
unknown

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comp(14784..14960)
DNA (177bp) protein (59aa)

This feature has no annotations

L3_058_072G1_scaffold_993_13
Acetobacterium woodii, Acetobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15235..16338)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LHW2_ACEWD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFA48492.1}; TaxID=931626 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Acetobacterium.;" source="Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC; 1655).;"
L3_058_072G1_scaffold_993_14
unknown

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comp(16370..16516)
DNA (147bp) protein (49aa)

This feature has no annotations

L3_058_072G1_scaffold_993_15
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16548..17957)
DNA (1410bp) protein (470aa)
Uncharacterized protein n=1 Tax=Clostridium difficile P51 RepID=T4RR98_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADK14744.1}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
L3_058_072G1_scaffold_993_16
unknown

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comp(18571..18810)
DNA (240bp) protein (80aa)

This feature has no annotations

L3_058_072G1_scaffold_993_17
unknown

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comp(18944..19909)
DNA (966bp) protein (322aa)

This feature has no annotations

L3_058_072G1_scaffold_993_18
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20546..21004)
DNA (459bp) protein (153aa)
SsrA-binding protein n=3 Tax=Clostridiales RepID=B0A6P2_9FIRM
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
smpB; SsrA-binding protein
L3_058_072G1_scaffold_993_19
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21151..22074)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XDR6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA10504.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
hypothetical protein
L3_058_072G1_scaffold_993_20
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22224..24422)
DNA (2199bp) protein (733aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
rnr; ribonuclease R (EC:3.1.-.-)
Ribonuclease R n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6P0_9FIRM
L3_058_072G1_scaffold_993_21
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24973..25161
DNA (189bp) protein (63aa)
Ferredoxin n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5XP08_9CLOT
Ferredoxin {ECO:0000313|EMBL:CDA10506.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ferredoxin
L3_058_072G1_scaffold_993_22
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25254..25943)
DNA (690bp) protein (230aa)
FCD domain protein n=1 Tax=Clostridium bartlettii CAG:1329 RepID=R5Y1J6_9CLOT
FCD domain protein {ECO:0000313|EMBL:CDA10507.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
transcriptional regulator
L3_058_072G1_scaffold_993_23
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26301..27968
DNA (1668bp) protein (556aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter bartlettii DSM 16795.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6N8_9FIRM
L3_058_072G1_scaffold_993_24
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28048..28368
DNA (321bp) protein (107aa)
UPI0003D684BE related cluster n=1 Tax=unknown RepID=UPI0003D684BE
Transporter auxin efflux carrier (AEC) family protein {ECO:0000313|EMBL:CDA10509.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
transporter
Displaying 24 items

View Taxonomy