ggKbase home page

L3_058_144G1_scaffold_189

Search features with annotation key words

Displaying items 1-30 of 242 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_144G1_scaffold_189_1
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

316..876
DNA (561bp) protein (187aa)
Putative flavoredoxin n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55786.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
flavoredoxin
L3_058_144G1_scaffold_189_2
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

988..3186
DNA (2199bp) protein (733aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ATP-dependent DNA helicase UvrD/REP family protein (EC:3.6.1.-)
Putative ATP-dependent helicase PcrA n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX48_9FIRM
L3_058_144G1_scaffold_189_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3277..3999
DNA (723bp) protein (241aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX47_9FIRM
L3_058_144G1_scaffold_189_4
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4001..4555
DNA (555bp) protein (185aa)
Ribosome-recycling factor n=2 Tax=Clostridiales RepID=G9YX46_9FIRM
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
frr; ribosome recycling factor
L3_058_144G1_scaffold_189_5
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4638..5384
DNA (747bp) protein (249aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
uppS; undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase n=3 Tax=Clostridiales RepID=G9YX45_9FIRM
L3_058_144G1_scaffold_189_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5385..6212
DNA (828bp) protein (276aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Phosphatidate cytidylyltransferase n=2 Tax=Clostridiales RepID=H1C7I8_9FIRM
cdsA; phosphatidate cytidylyltransferase
L3_058_144G1_scaffold_189_7
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6214..7377
DNA (1164bp) protein (388aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BKN2_9CLOT
L3_058_144G1_scaffold_189_8
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7393..8469
DNA (1077bp) protein (359aa)
putative M50B family peptidase (EC:3.4.24.-)
RIP metalloprotease RseP n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX42_9FIRM
RIP metalloprotease RseP {ECO:0000313|EMBL:KGF55779.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_058_144G1_scaffold_189_9
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8483..9520
DNA (1038bp) protein (346aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.4.3)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CYL7_9CLOT
L3_058_144G1_scaffold_189_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9546..13706
DNA (4161bp) protein (1387aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
polC; PolC-type DNA polymerase I (EC:2.7.7.7)
DNA polymerase III polC-type n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BJG4_9CLOT
L3_058_144G1_scaffold_189_11
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14025..14537
DNA (513bp) protein (171aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Putative ferritin-1 n=3 Tax=Clostridiales RepID=G9YX38_9FIRM
Ferritin-like protein
L3_058_144G1_scaffold_189_12
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14612..15172)
DNA (561bp) protein (187aa)
Peptidoglycan binding domain protein n=3 Tax=Clostridiales RepID=G9YX37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35547.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Putative peptidoglycan-binding domain-containing protein
L3_058_144G1_scaffold_189_13
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15169..16389)
DNA (1221bp) protein (407aa)
Peptidoglycan binding domain protein n=3 Tax=Clostridiales RepID=G9YX36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35546.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
iron transporter FeoB
L3_058_144G1_scaffold_189_14
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16402..16791)
DNA (390bp) protein (130aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YX35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35545.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
spore cortex-lytic enzyme pre-pro-form
L3_058_144G1_scaffold_189_15
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16960..17592
DNA (633bp) protein (211aa)
Redox-sensing transcriptional repressor Rex n=3 Tax=Clostridiales RepID=G9YX34_9FIRM
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
rex; redox-sensing transcriptional repressor Rex
L3_058_144G1_scaffold_189_16
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17589..18734
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2B2K0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI72369.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
putative surface layer protein
L3_058_144G1_scaffold_189_17
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18854..19348
DNA (495bp) protein (165aa)
Transcriptional regulator, MarR family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX32_9FIRM
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EHM38004.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
transcriptional regulatory protein
L3_058_144G1_scaffold_189_18
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19380..21119
DNA (1740bp) protein (580aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridiales RepID=G9YX31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55769.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ABC-type multidrug transport system, ATPase and permease components
L3_058_144G1_scaffold_189_19
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21112..22986
DNA (1875bp) protein (625aa)
ABC transporter, ATP-binding protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX30_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHM38002.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
ABC-type multidrug transport system, ATPase and permease components
L3_058_144G1_scaffold_189_20
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23110..23265
DNA (156bp) protein (52aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7H4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55767.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_058_144G1_scaffold_189_21
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23371..24135
DNA (765bp) protein (255aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CYZ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF55766.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
4Fe-4S ferredoxin
L3_058_144G1_scaffold_189_22
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24387..25793)
DNA (1407bp) protein (469aa)
MATE efflux family protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX27_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EHM37999.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
multidrug resistance protein, MATE family
L3_058_144G1_scaffold_189_23
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26064..28046)
DNA (1983bp) protein (661aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7H1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55764.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
integral membrane sensor signal transduction histidine kinase
L3_058_144G1_scaffold_189_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28021..28719)
DNA (699bp) protein (233aa)
Response regulator receiver domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX25_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EHM37997.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_058_144G1_scaffold_189_25
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28880..30289)
DNA (1410bp) protein (470aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7G9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55762.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_058_144G1_scaffold_189_26
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30286..30813)
DNA (528bp) protein (176aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C7G8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55761.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ECF subfamily RNA polymerase sigma-24 factor
L3_058_144G1_scaffold_189_27
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30939..31367)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YX22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55760.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_058_144G1_scaffold_189_28
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31409..31738)
DNA (330bp) protein (110aa)
Sporulation initiation factor Spo0A n=3 Tax=Clostridiales RepID=G9YX21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35531.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
stage 0 sporulation protein A
L3_058_144G1_scaffold_189_29
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31740..32123)
DNA (384bp) protein (128aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridiales RepID=G9YX20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35530.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_058_144G1_scaffold_189_30
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32675..33700
DNA (1026bp) protein (342aa)
Peptidase, M23 family n=2 Tax=Clostridiales RepID=G9YM87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55757.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
putative metalloendopeptidase
Displaying items 1-30 of 242 in total

View Taxonomy