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L3_058_144G1_scaffold_213

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Displaying items 1-30 of 171 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_144G1_scaffold_213_1
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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78..386
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=4 Tax=Clostridiales RepID=A7B305_RUMGN
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
LSU ribosomal protein L21P
L3_058_144G1_scaffold_213_2
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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395..727
DNA (333bp) protein (111aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B304_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48450.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted ribosomal protein
L3_058_144G1_scaffold_213_3
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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733..1017
DNA (285bp) protein (95aa)
50S ribosomal protein L27 n=4 Tax=Clostridiales RepID=A7B303_RUMGN
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
LSU ribosomal protein L27P
L3_058_144G1_scaffold_213_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1128..2411
DNA (1284bp) protein (428aa)
GTPase Obg n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TLP0_9FIRM
GTPase Obg {ECO:0000256|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000256|HAMAP-Rule:MF_01454}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Obg family GTPase CgtA
L3_058_144G1_scaffold_213_5
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2444..2734
DNA (291bp) protein (97aa)
RNA-binding protein, YhbY family n=4 Tax=Clostridiales RepID=A7B300_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ66599.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
conserved hypothetical protein TIGR00253
L3_058_144G1_scaffold_213_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2744..3367
DNA (624bp) protein (208aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Nicotinate (Nicotinamide) nucleotide adenylyltransferase n=4 Tax=Clostridiales RepID=V8BYI9_RUMGN
hypothetical protein
L3_058_144G1_scaffold_213_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3364..3948
DNA (585bp) protein (195aa)
Hydrolase, HD family n=4 Tax=Clostridiales RepID=A7B2Z8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48445.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
conserved hypothetical protein TIGR00488
L3_058_144G1_scaffold_213_8
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3984..4334
DNA (351bp) protein (117aa)
Ribosomal silencing factor RsfS n=4 Tax=Clostridiales RepID=A7B2Z7_RUMGN
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
iojap-related protein
L3_058_144G1_scaffold_213_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4418..5035)
DNA (618bp) protein (206aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor n=4 Tax=Clostridiales RepID=A7B2Z6_RUMGN
L3_058_144G1_scaffold_213_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5246..6985
DNA (1740bp) protein (580aa)
ABC transporter, ATP-binding protein n=3 Tax=Lachnospiraceae RepID=A7B2Z5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48442.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ABC-type multidrug transport system, ATPase and permease components
L3_058_144G1_scaffold_213_11
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6978..8780
DNA (1803bp) protein (601aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BYJ5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48441.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ABC-type multidrug transport system, ATPase and permease components
L3_058_144G1_scaffold_213_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8902..9219
DNA (318bp) protein (106aa)
LysM domain protein n=4 Tax=Clostridiales RepID=A7B2Z3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48440.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
peptidoglycan-binding lysin domain-containing protein
L3_058_144G1_scaffold_213_13
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9424..9669
DNA (246bp) protein (82aa)
2Fe-2S iron-sulfur cluster binding domain protein n=3 Tax=Lachnospiraceae RepID=A7B2Z1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48439.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Uncharacterized metal-binding protein
L3_058_144G1_scaffold_213_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9884..10960
DNA (1077bp) protein (359aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8C0G6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20241.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Site-specific recombinase XerD
L3_058_144G1_scaffold_213_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10990..11985
DNA (996bp) protein (332aa)
Oxidoreductase, aldo/keto reductase family protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B2Y7_RUMGN
Oxidoreductase, aldo/keto reductase family protein {ECO:0000313|EMBL:EDN77760.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
L3_058_144G1_scaffold_213_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11978..12733)
DNA (756bp) protein (252aa)
Transcriptional regulator, TetR family n=2 Tax=Ruminococcus gnavus RepID=A7B2Y6_RUMGN
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EDN77759.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
transcriptional regulator
L3_058_144G1_scaffold_213_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12929..13666
DNA (738bp) protein (246aa)
PP-loop family protein n=3 Tax=Lachnospiraceae RepID=A7B2Y5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48434.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
PP-loop domain-containing protein
L3_058_144G1_scaffold_213_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13726..14373)
DNA (648bp) protein (216aa)
Cytidylate kinase (EC:2.7.4.14)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2Y4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20245.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_058_144G1_scaffold_213_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14510..15400)
DNA (891bp) protein (297aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2Y3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48432.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_058_144G1_scaffold_213_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15432..16061)
DNA (630bp) protein (210aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2Y2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48431.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted double-stranded RNA/RNA-DNA hybrid binding protein
L3_058_144G1_scaffold_213_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16048..16626)
DNA (579bp) protein (193aa)
Phosphatidylglycerophosphate synthase (EC:2.7.8.5)
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase n=3 Tax=Lachnospiraceae RepID=V8BYK4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48430.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_058_144G1_scaffold_213_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16748..17677)
DNA (930bp) protein (310aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.12 5.4.99.-)
Pseudouridine synthase, RluA family n=3 Tax=Lachnospiraceae RepID=A7B2Y0_RUMGN
L3_058_144G1_scaffold_213_23
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17674..18198)
DNA (525bp) protein (175aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=2 Tax=Clostridiales RepID=R5UCF6_9FIRM
L3_058_144G1_scaffold_213_24
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18224..19012)
DNA (789bp) protein (263aa)
S4 domain protein n=3 Tax=Lachnospiraceae RepID=A7B2X7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20251.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Uncharacterized conserved protein, contains S4-like domain
L3_058_144G1_scaffold_213_25
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19024..19563)
DNA (540bp) protein (180aa)
Cell division protein SepF n=4 Tax=Clostridiales RepID=A7B2X6_RUMGN
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_058_144G1_scaffold_213_26
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19643..20335)
DNA (693bp) protein (231aa)
Pyridoxal phosphate enzyme, YggS family n=3 Tax=Lachnospiraceae RepID=A7B2X5_RUMGN
YggS family pyridoxal phosphate enzyme {ECO:0000313|EMBL:EGN48425.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
pyridoxal phosphate enzyme, YggS family
L3_058_144G1_scaffold_213_27
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20357..21736)
DNA (1380bp) protein (460aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2X4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN48424.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_058_144G1_scaffold_213_28
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21865..22074
DNA (210bp) protein (70aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2X3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77746.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_058_144G1_scaffold_213_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22138..23175)
DNA (1038bp) protein (346aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B2X2_RUMGN
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EDN77745.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
D-alanyl-D-alanine carboxypeptidase
L3_058_144G1_scaffold_213_30
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23159..23554)
DNA (396bp) protein (132aa)
Methylglyoxal synthase {ECO:0000256|SAAS:SAAS00089917}; EC=4.2.3.3 {ECO:0000256|SAAS:SAAS00089921};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=4 Tax=Clostridiales RepID=F7JVV1_9FIRM
Displaying items 1-30 of 171 in total

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