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L3_058_144G1_scaffold_31

Search features with annotation key words

Displaying items 1-30 of 181 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_144G1_scaffold_31_1
unknown

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502..1476
DNA (975bp) protein (325aa)

This feature has no annotations

L3_058_144G1_scaffold_31_2
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1481..2329
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Clostridium botulinum (strain Loch Maree / Type A3) RepID=B1KVS3_CLOBM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA54621.1}; TaxID=498214 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Loch Maree / Type A3).;"
L3_058_144G1_scaffold_31_3
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2368..2841
DNA (474bp) protein (158aa)
Transcriptional regulator PadR family protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M519_9CLOT
Transcriptional regulator PadR family protein {ECO:0000313|EMBL:EHI99468.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
PadR family transcriptional regulator
L3_058_144G1_scaffold_31_4
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2853..3974
DNA (1122bp) protein (374aa)
Peptidase M20/M25/M40 family n=1 Tax=Clostridium sp. CAG:81 RepID=R5G0Q7_9CLOT
Peptidase M20/M25/M40 family {ECO:0000313|EMBL:CCY09474.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
acetylornithine deacetylase
L3_058_144G1_scaffold_31_5
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3958..4818)
DNA (861bp) protein (287aa)
Transcriptional regulator n=1 Tax=Clostridium sp. CAG:590 RepID=R5ED25_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:CCX89179.1}; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
Transcriptional regulator
L3_058_144G1_scaffold_31_6
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4950..5264
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FIR2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY04758.1}; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
hypothetical protein
L3_058_144G1_scaffold_31_7
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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5227..5829
DNA (603bp) protein (201aa)
Putative uncharacterized protein n=1 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LPD5_TREBD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE16997.1}; TaxID=906968 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
L3_058_144G1_scaffold_31_8
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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6477..7520
DNA (1044bp) protein (348aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RD31_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC43209.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L3_058_144G1_scaffold_31_9
[Eubacterium] nodatum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7510..8418
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DRN4_9FIRM
Cobalt transport domain protein {ECO:0000313|EMBL:ETJ99808.1}; TaxID=1161902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium nodatum ATCC 33099.;"
cobalt transporter
L3_058_144G1_scaffold_31_10
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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8391..10046
DNA (1656bp) protein (552aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E113_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA90281.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
ATPase component of various ABC-type transport systems
L3_058_144G1_scaffold_31_11
[Eubacterium] nodatum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10025..10960
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3B8B8_9FIRM
ECF-type riboflavin transporter, S component {ECO:0000313|EMBL:ETJ99736.1}; TaxID=1161902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium nodatum ATCC 33099.;"
hypothetical protein
L3_058_144G1_scaffold_31_12
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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11379..12485
DNA (1107bp) protein (369aa)
Fibronectin type III domain-containing protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DPN9_9FIRM
Fibronectin type III domain-containing protein {ECO:0000313|EMBL:CDA89535.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
L3_058_144G1_scaffold_31_13
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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12505..13797
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DVG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA92463.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
surface/cell-adhesion protein
L3_058_144G1_scaffold_31_14
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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13800..15149
DNA (1350bp) protein (450aa)
Uncharacterized protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F1V6_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:CEO87869.1}; TaxID=499207 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Syntrophaceticus.;" source="Syntrophaceticus schinkii.;"
hypothetical protein
L3_058_144G1_scaffold_31_15
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15572..15721
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DSR7_9FIRM
Uncharacterized small protein (DUF2292) {ECO:0000313|EMBL:CEQ03272.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
L3_058_144G1_scaffold_31_16
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15847..16482
DNA (636bp) protein (212aa)
Transporter, MotA/TolQ/ExbB proton channel family protein n=2 Tax=Desulfitobacterium hafniense RepID=G9XNJ7_DESHA
hypothetical protein
Transporter, MotA/TolQ/ExbB proton channel family protein {ECO:0000313|EMBL:EHL06775.1}; TaxID=537010 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense DP7.;"
L3_058_144G1_scaffold_31_17
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

16469..16780
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6ENK6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA91532.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
hypothetical protein
L3_058_144G1_scaffold_31_18
Candidatus Methanomassiliicoccus intestinalis, Methanomassiliicoccus, Methanomassiliicoccales, Thermoplasmata, Euryarchaeota, Archaea

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16827..21944
DNA (5118bp) protein (1706aa)
Uncharacterized protein n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9TA60_9EURY
S-layer protein
Uncharacterized protein {ECO:0000313|EMBL:AGN26541.1}; TaxID=1295009 species="Archaea; Euryarchaeota; Thermoplasmata; Methanomassiliicoccales; Methanomassiliicoccaceae; Methanomassiliicoccus.;" source="Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1.;"
L3_058_144G1_scaffold_31_19
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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21988..23436
DNA (1449bp) protein (483aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DSS1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA91533.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
hypothetical protein predicted by Glimmer/Critica
L3_058_144G1_scaffold_31_20
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23440..24384
DNA (945bp) protein (315aa)
MoxR-like ATPases (EC:3.6.3.-)
Magnesium chelatase subunit ChII family protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TG83_9FIRM
ATPase family protein {ECO:0000313|EMBL:ERK46531.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
L3_058_144G1_scaffold_31_21
Roseburia sp. CAG:50, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24381..25400
DNA (1020bp) protein (340aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=R5TMX8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ64689.1}; TaxID=1262949 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:50.;"
hypothetical protein
L3_058_144G1_scaffold_31_22
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25387..27459
DNA (2073bp) protein (691aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YUU4_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB94664.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Transglutaminase-like enzymes, putative cysteine proteases
L3_058_144G1_scaffold_31_23
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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27434..29404
DNA (1971bp) protein (657aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DSS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA91538.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
hypothetical protein
L3_058_144G1_scaffold_31_24
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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29411..30430
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LMI3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB88653.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
S-layer protein
L3_058_144G1_scaffold_31_25
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

30709..31314
DNA (606bp) protein (202aa)
Resolvase N-terminal domain protein n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DM61_9FIRM
Resolvase N-terminal domain protein {ECO:0000313|EMBL:CDA89603.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_058_144G1_scaffold_31_26
unknown

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31817..31972
DNA (156bp) protein (52aa)

This feature has no annotations

L3_058_144G1_scaffold_31_27
unknown

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32150..32791
DNA (642bp) protein (214aa)

This feature has no annotations

L3_058_144G1_scaffold_31_28
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

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32891..37528
DNA (4638bp) protein (1546aa)
Bacterial Ig-like domain (Group 2)./Bacterial Ig-like domain (Group 3) n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6E545_9FIRM
Bacterial Ig-like domain (Group 2)./Bacterial Ig-like domain (Group 3) {ECO:0000313|EMBL:CDA92369.1}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
Bacterial Ig-like domain (group 2)./Bacterial Ig-like domain (group 3).
L3_058_144G1_scaffold_31_29
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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37694..38335
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI0003601DFD
Uncharacterized protein {ECO:0000313|EMBL:EOS24494.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
hypothetical protein
L3_058_144G1_scaffold_31_30
[Eubacterium] nodatum, Clostridiales, Clostridia, Firmicutes, Bacteria

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38762..39328
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EN21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETJ99722.1}; TaxID=1161902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium nodatum ATCC 33099.;"
metal-binding protein
Displaying items 1-30 of 181 in total

View Taxonomy