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L3_058_144G1_scaffold_40

Search features with annotation key words

Displaying items 1-30 of 167 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_144G1_scaffold_40_1
unknown

Not on your lists

1..357
DNA (357bp) protein (119aa)

This feature has no annotations

L3_058_144G1_scaffold_40_2
[Eubacterium] nodatum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(368..1504)
DNA (1137bp) protein (379aa)
Cobalt-precorrin-5B C(1)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00787}; EC=2.1.1.195 {ECO:0000256|HAMAP-Rule:MF_00787};; Cobalt-precorrin-6A synthase {ECO:0000256|HAMAP-Rule:MF_00787}; TaxID=1161902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium nodatum ATCC 33099.;"
Cobalt-precorrin-6A synthase n=1 Tax=Clostridium papyrosolvens C7 RepID=U4QZC2_9CLOT
cobalamin biosynthesis protein CbiD
L3_058_144G1_scaffold_40_3
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1900..2451)
DNA (552bp) protein (184aa)
NUDIX hydrolase n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R7G0_CLOSW
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EXG87060.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
NUDIX hydrolase
L3_058_144G1_scaffold_40_4
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

comp(2462..3778)
DNA (1317bp) protein (439aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB (EC:2.-.-.-)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DUW9_9FIRM
L3_058_144G1_scaffold_40_5
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3800..4177)
DNA (378bp) protein (126aa)
TIGR03987 family protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L9L2_BLAHA
TIGR03987 family protein {ECO:0000313|EMBL:EEX21358.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
hypothetical protein
L3_058_144G1_scaffold_40_6
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4417..4728
DNA (312bp) protein (104aa)
Rhodanese domain protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R1N5_CLOSW
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:EXG83914.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
rhodanese domain-containing protein
L3_058_144G1_scaffold_40_7
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4738..6432
DNA (1695bp) protein (565aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CTV9_9CLOT
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EEG57604.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Uncharacterized NAD(FAD)-dependent dehydrogenases
L3_058_144G1_scaffold_40_8
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6429..7238
DNA (810bp) protein (270aa)
Uncharacterized protein n=7 Tax=Clostridium RepID=N9XTD0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF25047.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
Transcriptional regulator, AraC family
L3_058_144G1_scaffold_40_9
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7309..7611
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9YIM9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ11728.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
hypothetical protein
L3_058_144G1_scaffold_40_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7661..8995)
DNA (1335bp) protein (445aa)
glutamate carboxypeptidase (EC:3.5.1.-)
Amidohydrolase family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DAU5_CLODI
Amidohydrolase family protein {ECO:0000313|EMBL:EQF23571.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
L3_058_144G1_scaffold_40_11
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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comp(9009..10220)
DNA (1212bp) protein (404aa)
Major facilitator superfamily MFS_1 n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6Z712_MELRP
major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AFN74945.1}; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseus (strain JCM 17771 / P3M-2).;"
L3_058_144G1_scaffold_40_12
Desulfovibrio hydrothermalis, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10222..11400)
DNA (1179bp) protein (393aa)
Major facilitator superfamily MFS_1 n=1 Tax=Desulfovibrio hydrothermalis AM13 = DSM 14728 RepID=L0R830_9DELT
Major facilitator superfamily MFS_1
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CCO22355.1}; TaxID=1121451 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio hydrothermalis AM13 = DSM 14728.;"
L3_058_144G1_scaffold_40_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11375..12721)
DNA (1347bp) protein (449aa)
Amidohydrolase family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DAU5_CLODI
Amidohydrolase family protein {ECO:0000313|EMBL:EQF23571.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
aminobenzoyl-glutamate utilization protein
L3_058_144G1_scaffold_40_14
unknown

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comp(12924..13016)
DNA (93bp) protein (31aa)

This feature has no annotations

L3_058_144G1_scaffold_40_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13020..15041)
DNA (2022bp) protein (674aa)
AAA domain family protein n=1 Tax=Clostridium difficile P59 RepID=T4SG67_CLODI
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EHJ32851.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
Transcriptional regulator, sigma-54 dependent
L3_058_144G1_scaffold_40_16
Treponema azotonutricium, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(15077..16015)
DNA (939bp) protein (313aa)
Putative uncharacterized protein n=1 Tax=Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9) RepID=F5YBV6_TREAZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEF82828.1}; TaxID=545695 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9).;"
L3_058_144G1_scaffold_40_17
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16125..16562)
DNA (438bp) protein (146aa)
GCN5-related N-acetyltransferase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JJZ3_CELLD
GCN5-related N-acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADZ83275.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_058_144G1_scaffold_40_18
Eremococcus coleocola, Eremococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16567..17733)
DNA (1167bp) protein (389aa)
Amidohydrolase n=1 Tax=Eremococcus coleocola ACS-139-V-Col8 RepID=E4KM69_9LACT
Amidohydrolase {ECO:0000313|EMBL:EFR32058.1}; TaxID=908337 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Eremococcus.;" source="Eremococcus coleocola ACS-139-V-Col8.;"
amidohydrolase
L3_058_144G1_scaffold_40_19
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17746..18714)
DNA (969bp) protein (323aa)
Threonine ammonia-lyase {ECO:0000313|EMBL:AJG99173.1}; EC=4.3.1.19 {ECO:0000313|EMBL:AJG99173.1};; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
pyridoxal-5''''-phosphate-dependent protein subunit beta n=1 Tax=Paenibacillus peoriae RepID=UPI00026C61F5
pyridoxal-5'-phosphate-dependent protein subunit beta
L3_058_144G1_scaffold_40_20
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19001..19645)
DNA (645bp) protein (215aa)
ABC transporter n=1 Tax=Clostridium sp. CAG:964 RepID=R6UA02_9CLOT
ABC transporter {ECO:0000313|EMBL:CDC81395.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
ABC transporter ATP-binding protein
L3_058_144G1_scaffold_40_21
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19642..21747)
DNA (2106bp) protein (702aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:964 RepID=R6UME4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC81396.1}; TaxID=1262848 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
L3_058_144G1_scaffold_40_22
unknown

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comp(21774..22127)
DNA (354bp) protein (118aa)

This feature has no annotations

L3_058_144G1_scaffold_40_23
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22183..22758)
DNA (576bp) protein (192aa)
VanZ family protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I707_CLOCE
VanZ family protein
VanZ family protein {ECO:0000313|EMBL:ACL76999.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
L3_058_144G1_scaffold_40_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22751..24082)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme 90A8 RepID=N9ZHS2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ19567.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_058_144G1_scaffold_40_25
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

comp(24685..25101)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6ET34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB03035.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
L3_058_144G1_scaffold_40_26
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

Not on your lists

25351..25719
DNA (369bp) protein (123aa)
Transcriptional regulator PadR family n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6F3Y6_9FIRM
Transcriptional regulator PadR family {ECO:0000313|EMBL:CDB03666.1}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
Predicted transcriptional regulators
L3_058_144G1_scaffold_40_27
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25703..26272
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VEC3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO58126.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
hypothetical protein
L3_058_144G1_scaffold_40_28
[Eubacterium] nodatum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26873..27874)
DNA (1002bp) protein (334aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1161902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium nodatum ATCC 33099.;"
glycerol-3-phosphate dehydrogenase (NAD(P)(+)) (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6FLH5_9FIRM
L3_058_144G1_scaffold_40_29
[Eubacterium] sulci, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27889..28476)
DNA (588bp) protein (196aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Eubacterium infirmum F0142 RepID=H1PLF4_9FIRM
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=888727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium sulci ATCC 35585.;"
membrane protein
L3_058_144G1_scaffold_40_30
Firmicutes bacterium CAG:238, Firmicutes, Bacteria

Not on your lists

comp(28476..29801)
DNA (1326bp) protein (442aa)
GTPase Der n=1 Tax=Firmicutes bacterium CAG:238 RepID=R6DXE6_9FIRM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1263011 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:238.;"
engA; GTP-binding protein EngA
Displaying items 1-30 of 167 in total

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