ggKbase home page

L3_058_144G1_scaffold_790

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_058_144G1_scaffold_790_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

422..1033
DNA (612bp) protein (204aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LT79_9CLOT
Collagen triple helix repeat family protein {ECO:0000313|EMBL:EQJ51430.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_058_144G1_scaffold_790_2
unknown

Not on your lists

comp(1255..1653)
DNA (399bp) protein (133aa)

This feature has no annotations

L3_058_144G1_scaffold_790_3
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2140..3594
DNA (1455bp) protein (485aa)
H(+)-transporting two-sector ATPase (EC:3.6.3.14)
Potassium uptake protein, TrkH family n=2 Tax=Clostridium hathewayi RepID=D3ABT6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI61597.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
L3_058_144G1_scaffold_790_4
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3608..4267
DNA (660bp) protein (220aa)
TrkA N-terminal domain protein n=2 Tax=Clostridium hathewayi RepID=D3ABT5_9CLOT
TrkA N-terminal domain protein {ECO:0000313|EMBL:EFD00758.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
TrkA-N domain-containing protein
L3_058_144G1_scaffold_790_5
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4315..5130
DNA (816bp) protein (272aa)
Putative membrane protein n=1 Tax=Clostridium sp. D5 RepID=F0Z2R0_9CLOT
Putative membrane protein {ECO:0000313|EMBL:EGB91735.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hypothetical protein
L3_058_144G1_scaffold_790_6
Bacteroides sp. 1_1_14, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5127..5636
DNA (510bp) protein (170aa)
Acetyltransferase n=1 Tax=Bacteroides sp. 1_1_14 RepID=D7IK52_9BACE
Acetyltransferase {ECO:0000313|EMBL:EFI02151.1}; TaxID=469585 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_14.;"
acetyltransferase
L3_058_144G1_scaffold_790_7
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5674..6564)
DNA (891bp) protein (297aa)
Transcriptional regulator, LysR family n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R8D9_CLOSW
Transcriptional regulator {ECO:0000313|EMBL:EXG85716.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
LysR family transcriptional regulator
L3_058_144G1_scaffold_790_8
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6734..7771
DNA (1038bp) protein (346aa)
Sulfite reductase, subunit A {ECO:0000313|EMBL:EEG54689.1}; EC=1.8.-.- {ECO:0000313|EMBL:EEG54689.1};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Sulfite reductase, subunit A n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D1V9_9CLOT
sulfite reductase
L3_058_144G1_scaffold_790_9
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7764..8555
DNA (792bp) protein (264aa)
Sulfite reductase, subunit B n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XQM3_9CLOT
Sulfite reductase, subunit B {ECO:0000313|EMBL:ENY97931.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
hypothetical protein
L3_058_144G1_scaffold_790_10
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8572..9609
DNA (1038bp) protein (346aa)
Sulfite reductase, subunit C {ECO:0000313|EMBL:EEG54687.1}; EC=1.8.-.- {ECO:0000313|EMBL:EEG54687.1};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Sulfite reductase, subunit C n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D1V7_9CLOT
hypothetical protein
L3_058_144G1_scaffold_790_11
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10062..11243
DNA (1182bp) protein (394aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=A5MYY1_CLOK5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH06860.1}; TaxID=583346 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain NBRC 12016).;"
L3_058_144G1_scaffold_790_12
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

Not on your lists

11257..12270
DNA (1014bp) protein (338aa)
Predicted dehydrogenase related to phosphoglycerate dehydrogenase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TYK0_METKA
D-3-phosphoglycerate dehydrogenase
Predicted dehydrogenase related to phosphoglycerate dehydrogenase {ECO:0000313|EMBL:AAM01514.1}; TaxID=190192 species="Archaea; Euryarchaeota; Methanopyri; Methanopyrales; Methanopyraceae; Methanopyrus.;" source="Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC; 100938).;"
L3_058_144G1_scaffold_790_13
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12463..14028
DNA (1566bp) protein (522aa)
ABC-type dipeptide transport system periplasmic component n=1 Tax=Clostridium sp. CAG:58 RepID=R6RSE2_9CLOT
ABC-type dipeptide transport system periplasmic component {ECO:0000313|EMBL:CDC50565.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
ABC-type dipeptide transport system, periplasmic component
L3_058_144G1_scaffold_790_14
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14116..15072
DNA (957bp) protein (319aa)
ABC-type transporter integral membrane subunit n=1 Tax=Clostridium sp. CAG:58 RepID=R6SVG1_9CLOT
ABC-type transporter integral membrane subunit {ECO:0000313|EMBL:CDC50567.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
appB; Oligopeptide transport system permease protein AppB
L3_058_144G1_scaffold_790_15
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

15072..15956
DNA (885bp) protein (295aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LUS2_TEPAE
appC; Oligopeptide transport system permease protein AppC
Oligopeptide transport system permease protein AppC {ECO:0000313|EMBL:CDI40392.1}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
L3_058_144G1_scaffold_790_16
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15969..16949
DNA (981bp) protein (327aa)
ABC-type dipeptide/oligopeptide/nickel transport system ATPase component n=1 Tax=Clostridium sp. CAG:58 RepID=R6RZ02_9CLOT
ABC-type dipeptide/oligopeptide/nickel transport system ATPase component {ECO:0000313|EMBL:CDC50564.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
L3_058_144G1_scaffold_790_17
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16962..17939
DNA (978bp) protein (326aa)
Oligopeptide ABC transporter ATP-binding protein OppF n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I5M5_9FIRM
Oligopeptide ABC transporter ATP-binding protein OppF {ECO:0000313|EMBL:CCY32312.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
L3_058_144G1_scaffold_790_18
Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

17999..19168
DNA (1170bp) protein (390aa)
Dihydroorotate dehydrogenase family protein n=1 Tax=Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002) RepID=E4SEF7_CALK2
dihydroorotate dehydrogenase family protein
Dihydroorotate dehydrogenase family protein {ECO:0000313|EMBL:ADQ45444.1}; TaxID=632348 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 /; 2002).;"
L3_058_144G1_scaffold_790_19
unknown

Not on your lists

19192..19605
DNA (414bp) protein (138aa)

This feature has no annotations

L3_058_144G1_scaffold_790_20
unknown

Not on your lists

19622..20017
DNA (396bp) protein (132aa)

This feature has no annotations

L3_058_144G1_scaffold_790_21
unknown

Not on your lists

20020..20520
DNA (501bp) protein (167aa)

This feature has no annotations

L3_058_144G1_scaffold_790_22
unknown

Not on your lists

20556..20951
DNA (396bp) protein (132aa)

This feature has no annotations

L3_058_144G1_scaffold_790_23
unknown

Not on your lists

20954..21454
DNA (501bp) protein (167aa)

This feature has no annotations

L3_058_144G1_scaffold_790_24
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21682..22902
DNA (1221bp) protein (407aa)
Peptidase T {ECO:0000256|SAAS:SAAS00064331}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279025};; EC=3.4.11.- {ECO:0000256|SAAS:SAAS00275860};; EC=3.4.11.4 {ECO:0000256|SAAS:SAAS00064282};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
peptidase (EC:3.4.11.4)
Peptidase T n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NU24_9FIRM
L3_058_144G1_scaffold_790_25
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23083..24819
DNA (1737bp) protein (579aa)
PAS domain S-box protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BNF1_CLOSY
PAS domain S-box protein {ECO:0000313|EMBL:ERI73735.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Fis family PAS modulated sigma54 specific transcriptional regulator
L3_058_144G1_scaffold_790_26
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24933..25520
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZLH7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCQ97222.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
SIS domain-containing protein
L3_058_144G1_scaffold_790_27
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25533..26591
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZG76_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCQ97223.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein
L3_058_144G1_scaffold_790_28
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26788..27906
DNA (1119bp) protein (373aa)
Alanine dehydrogenase-like protein n=1 Tax=Clostridium ultunense Esp RepID=M1ZEV8_9CLOT
Alanine dehydrogenase-like protein {ECO:0000313|EMBL:CCQ97221.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
Alanine dehydrogenase-like protein
L3_058_144G1_scaffold_790_29
Natranaerobius thermophilus, Natranaerobius, Natranaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27920..29461
DNA (1542bp) protein (514aa)
Na+/H+ antiporter NhaC n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A8E0_NATTJ
Na+/H+ antiporter NhaC
Na+/H+ antiporter NhaC {ECO:0000313|EMBL:ACB84506.1}; TaxID=457570 species="Bacteria; Firmicutes; Clostridia; Natranaerobiales; Natranaerobiaceae; Natranaerobius.;" source="Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 /; JW/NM-WN-LF).;"
L3_058_144G1_scaffold_790_30
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30618..31142)
DNA (525bp) protein (175aa)
Regulatory protein TetR n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0T1Z7_SYNGF
regulatory protein TetR
Regulatory protein TetR {ECO:0000313|EMBL:ADY55261.1}; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
Displaying items 1-30 of 32 in total

View Taxonomy