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L3_060_000G1_scaffold_987

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Displaying items 1-30 of 44 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_000G1_scaffold_987_1
unknown

Not on your lists

comp(67..708)
DNA (642bp) protein (214aa)

This feature has no annotations

L3_060_000G1_scaffold_987_2

Not on your lists

comp(723..1142)
DNA (420bp) protein (140aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SUN4_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC50956.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_060_000G1_scaffold_987_3
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(1172..1615)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XUF8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13309.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_060_000G1_scaffold_987_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1843..3021)
DNA (1179bp) protein (393aa)
Malic enzyme (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate-decarboxylating) n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC50_9FIRM
Malate dehydrogenase (Oxaloacetate-decarboxylating) {ECO:0000313|EMBL:EGJ48084.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_000G1_scaffold_987_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3195..6002)
DNA (2808bp) protein (936aa)
S-DNA-T family DNA segregation ATPase FtsK/SpoIIIE n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBV9_9FIRM
S-DNA-T family DNA segregation ATPase FtsK/SpoIIIE {ECO:0000313|EMBL:EGJ47837.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ftsK; cell division protein FtsK
L3_060_000G1_scaffold_987_6
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(6060..6914)
DNA (855bp) protein (285aa)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
uppP; undecaprenyl-diphosphatase (EC:3.6.1.27)
Undecaprenyl-diphosphatase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XU66_9FIRM
L3_060_000G1_scaffold_987_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7069..7770)
DNA (702bp) protein (234aa)
ATP-dependent Clp protease proteolytic subunit ClpP (EC:3.4.21.92)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBV3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47831.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_000G1_scaffold_987_8
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

7985..8524
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YAD1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13368.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
Predicted transcriptional regulators
L3_060_000G1_scaffold_987_9
Phascolarctobacterium sp. CAG:266, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8702..10027
DNA (1326bp) protein (442aa)
Putative efflux protein MATE family n=1 Tax=Phascolarctobacterium sp. CAG:266 RepID=R6HAD1_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CDB34668.1}; TaxID=1262915 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:266.;"
putative efflux protein, MATE family
L3_060_000G1_scaffold_987_10
Phascolarctobacterium sp. CAG:266, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(10063..11160)
DNA (1098bp) protein (366aa)
Citrate transporter n=1 Tax=Phascolarctobacterium sp. CAG:266 RepID=R6HFN7_9FIRM
Citrate transporter {ECO:0000313|EMBL:CDB35760.1}; TaxID=1262915 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium sp. CAG:266.;"
citrate transporter
L3_060_000G1_scaffold_987_11
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(11213..12622)
DNA (1410bp) protein (470aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
putative aminopeptidase (EC:3.4.11.-)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YC88_9FIRM
L3_060_000G1_scaffold_987_12
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(12626..13237)
DNA (612bp) protein (204aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YDE2_9FIRM
L3_060_000G1_scaffold_987_13
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(13239..13595)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZFK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13200.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_060_000G1_scaffold_987_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13622..15295)
DNA (1674bp) protein (558aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBV0_9FIRM
L3_060_000G1_scaffold_987_15
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(15304..15561)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YC80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13197.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_060_000G1_scaffold_987_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15602..16666)
DNA (1065bp) protein (355aa)
Peptide chain release factor 1 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBU7_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
prfA; peptide chain release factor 1
L3_060_000G1_scaffold_987_17
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16718..17362)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BY01_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI77105.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_060_000G1_scaffold_987_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17369..19288)
DNA (1920bp) protein (640aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47823.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative ABC transporter ATP-binding protein
L3_060_000G1_scaffold_987_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19346..20740)
DNA (1395bp) protein (465aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBU4_9FIRM
L3_060_000G1_scaffold_987_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20747..21796)
DNA (1050bp) protein (350aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ddl; D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBU3_9FIRM
L3_060_000G1_scaffold_987_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22008..22649)
DNA (642bp) protein (214aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
upp; uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP9_9FIRM
L3_060_000G1_scaffold_987_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22664..23389)
DNA (726bp) protein (242aa)
Universal bacterial protein YeaZ n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP8_9FIRM
Universal bacterial protein YeaZ {ECO:0000313|EMBL:EGJ47776.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
peptidase M22 family protein
L3_060_000G1_scaffold_987_23
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23454..23882)
DNA (429bp) protein (143aa)
Hydrolase, P-loop family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P072_9FIRM
Hydrolase, P-loop family {ECO:0000313|EMBL:EDM98222.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
putative hydrolase
L3_060_000G1_scaffold_987_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24008..25195
DNA (1188bp) protein (396aa)
Rod shape determining protein RodA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP6_9FIRM
Rod shape determining protein RodA {ECO:0000313|EMBL:EGJ47774.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative cell division protein FtsW
L3_060_000G1_scaffold_987_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25219..26583
DNA (1365bp) protein (455aa)
Aldehyde dehydrogenase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCC0_9FIRM
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Aldehyde Dehydrogenase
L3_060_000G1_scaffold_987_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26689..27693
DNA (1005bp) protein (335aa)
dGTPase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCC1_9FIRM
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
deoxyguanosinetriphosphate triphosphohydrolase
L3_060_000G1_scaffold_987_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27747..29507
DNA (1761bp) protein (587aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dnaG; DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCC2_9FIRM
L3_060_000G1_scaffold_987_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29504..30859
DNA (1356bp) protein (452aa)
RNA polymerase sigma factor SigA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9B0_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
sigA; RNA polymerase sigma factor SigA
L3_060_000G1_scaffold_987_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31129..32262)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47341.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_000G1_scaffold_987_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32383..32823)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47338.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative hydrolase
Displaying items 1-30 of 44 in total

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