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L3_060_043G1_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 375 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_043G1_scaffold_2_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..201)
DNA (201bp) protein (67aa)
Uncharacterized protein n=7 Tax=Clostridiales RepID=D5Q7G4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCK92131.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
Helix-turn-helix.
L3_060_043G1_scaffold_2_2
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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315..623
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YQ43_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD59627.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
hypothetical protein
L3_060_043G1_scaffold_2_3
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(733..1938)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2Y5A7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD59628.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
hypothetical protein
L3_060_043G1_scaffold_2_4
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2393..3331)
DNA (939bp) protein (313aa)
Elongation factor Ts n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3ADE3_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
translation elongation factor Ts (EF-Ts)
L3_060_043G1_scaffold_2_5
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3361..4101)
DNA (741bp) protein (247aa)
30S ribosomal protein S2 n=3 Tax=Lachnospiraceae RepID=C9LBB7_BLAHA
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
SSU ribosomal protein S2P
L3_060_043G1_scaffold_2_6
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4277..5101)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LBB8_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:EEX20425.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
acetyl esterase
L3_060_043G1_scaffold_2_7
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(5098..7050)
DNA (1953bp) protein (651aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6R884_9FIRM
L3_060_043G1_scaffold_2_8
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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7216..7965
DNA (750bp) protein (250aa)
Antibiotic transport system ATP-binding protein n=1 Tax=Dorea sp. 5-2 RepID=R9N225_9FIRM
Antibiotic transport system ATP-binding protein {ECO:0000313|EMBL:EOS77335.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
ABC-type multidrug transport system, ATPase component
L3_060_043G1_scaffold_2_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7958..8695
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000366AFAD
ABC-type transport system, permease {ECO:0000313|EMBL:CCL22878.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
ABC transporter permease
L3_060_043G1_scaffold_2_10
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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8700..9434
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000365E89B
Uncharacterized protein {ECO:0000313|EMBL:EOS77337.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
putative ABC transporter, permease protein
L3_060_043G1_scaffold_2_11
Paenibacillus graminis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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9508..10182
DNA (675bp) protein (225aa)
Subtilin biosynthesis regulatory protein SpaR n=1 Tax=Clostridium sp. D5 RepID=F0YTV9_9CLOT
multidrug ABC transporter
Multidrug ABC transporter {ECO:0000313|EMBL:AIQ66911.1}; TaxID=189425 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus graminis.;"
L3_060_043G1_scaffold_2_12
Paenibacillus riograndensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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10158..11501
DNA (1344bp) protein (448aa)
sensor histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1073571 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus riograndensis SBR5.;"
Sensor histidine kinase n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LBL2_ACEWD
L3_060_043G1_scaffold_2_13
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(11599..12015)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RBZ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46418.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein
L3_060_043G1_scaffold_2_14
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12008..12541)
DNA (534bp) protein (178aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=C9L836_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:CDC08418.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
flavodoxin family protein
L3_060_043G1_scaffold_2_15
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12642..13532)
DNA (891bp) protein (297aa)
Transporter, small conductance mechanosensitive ion channel MscS family protein n=3 Tax=Lachnospiraceae RepID=C9L835_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:CDC08419.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
Small-conductance mechanosensitive channel
L3_060_043G1_scaffold_2_16
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(13553..15886)
DNA (2334bp) protein (778aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
glycogen branching enzyme (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RC01_9FIRM
L3_060_043G1_scaffold_2_17
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16070..16549
DNA (480bp) protein (160aa)
NADH:ubiquinone oxidoreductase 24 kD subunit (EC:1.6.5.3)
NADH dehydrogenase I E subunit n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NQB9_9FIRM
NADH dehydrogenase I E subunit {ECO:0000313|EMBL:CDC08421.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
L3_060_043G1_scaffold_2_18
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

16546..18420
DNA (1875bp) protein (625aa)
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit (EC:1.6.5.3)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RTL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46426.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L3_060_043G1_scaffold_2_19
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

18432..20120
DNA (1689bp) protein (563aa)
hydrogenases, Fe-only (EC:1.6.5.3)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RC06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46428.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L3_060_043G1_scaffold_2_20
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20239..20826)
DNA (588bp) protein (196aa)
ABC transporter, ATP-binding protein n=3 Tax=Lachnospiraceae RepID=C9L830_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:CDC08424.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
hypothetical protein
L3_060_043G1_scaffold_2_21
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20829..21596)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NB61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC08425.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
hypothetical protein
L3_060_043G1_scaffold_2_22
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21571..22596)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=C9L828_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:CDC08426.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
hypothetical protein
L3_060_043G1_scaffold_2_23
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(22657..23931)
DNA (1275bp) protein (425aa)
Uncharacterized conserved protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RF24_9FIRM
Uncharacterized conserved protein {ECO:0000313|EMBL:CDC46430.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein
L3_060_043G1_scaffold_2_24
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(23999..25162)
DNA (1164bp) protein (388aa)
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RF33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46440.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L3_060_043G1_scaffold_2_25
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(25164..26246)
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RTM9_9FIRM
L3_060_043G1_scaffold_2_26
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(26275..27960)
DNA (1686bp) protein (562aa)
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6SIK9_9FIRM
Acetolactate synthase {ECO:0000313|EMBL:CDC46442.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L3_060_043G1_scaffold_2_27
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(27980..29647)
DNA (1668bp) protein (556aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RC19_9FIRM
L3_060_043G1_scaffold_2_28
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(29687..30772)
DNA (1086bp) protein (362aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RM99_9FIRM
L3_060_043G1_scaffold_2_29
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31096..31968)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI0003678D97
Uncharacterized conserved protein {ECO:0000313|EMBL:CCY34151.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L3_060_043G1_scaffold_2_30
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31965..32849)
DNA (885bp) protein (295aa)
L-serine dehydratase, iron-sulfur-dependent subunit alpha (EC:4.3.1.17)
L-serine dehydratase, iron-sulfur-dependent, alpha subunit n=3 Tax=Lachnospiraceae RepID=C9L822_BLAHA
L-serine dehydratase {ECO:0000313|EMBL:EGG82612.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
Displaying items 1-30 of 375 in total

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