ggKbase home page

L3_060_043G1_scaffold_29

Search features with annotation key words

Displaying items 1-30 of 147 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_043G1_scaffold_29_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

317..817
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6G4W3_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJU71835.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_060_043G1_scaffold_29_2
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

833..1345
DNA (513bp) protein (171aa)
3H domain protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LPB9_CLOB8
3H domain-containing protein
3H domain protein {ECO:0000313|EMBL:ABR32199.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L3_060_043G1_scaffold_29_3
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1364..2758
DNA (1395bp) protein (465aa)
FAD-dependent oxidoreductase n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CB36_9CLOT
FAD-dependent oxidoreductase {ECO:0000313|EMBL:EOR26522.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
FAD-dependent oxidoreductase
L3_060_043G1_scaffold_29_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2768..2998
DNA (231bp) protein (77aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2THC4_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY81490.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L3_060_043G1_scaffold_29_5
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3308..4585
DNA (1278bp) protein (426aa)
Seryl-tRNA synthetase n=1 Tax=Clostridium sp. CAG:58 RepID=R6RG84_9CLOT
Seryl-tRNA synthetase {ECO:0000313|EMBL:CDC47883.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
seryl-tRNA synthetase
L3_060_043G1_scaffold_29_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4932..5741)
DNA (810bp) protein (270aa)
Cof-like hydrolase n=1 Tax=Clostridium colicanis 209318 RepID=N9XY05_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJU71841.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
HAD hydrolase, IIB family protein
L3_060_043G1_scaffold_29_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6257..7204
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Clostridium arbusti RepID=UPI0002894C9E
beta-lactamase enzyme family protein
Beta-lactamase enzyme family protein {ECO:0000313|EMBL:AIY84737.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_060_043G1_scaffold_29_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7310..10744
DNA (3435bp) protein (1145aa)
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000256|HAMAP-Rule:MF_01452, ECO:0000256|SAAS:SAAS00044573}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01452, ECO:0000256|SAAS:SAAS00044602};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01452, ECO:0000256|SAAS:SAAS00044578};; ATP-dependent helicase/nuclease AddB {ECO:0000256|HAMAP-Rule:MF_01452}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FCC5_9CLOT
addB; helicase-exonuclease AddAB, AddB subunit
L3_060_043G1_scaffold_29_9
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10731..14432
DNA (3702bp) protein (1234aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00145970};; ATP-dependent helicase/nuclease AddA {ECO:0000256|HAMAP-Rule:MF_01451}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
ATP-dependent helicase/nuclease subunit A n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FPP4_9CLOT
addA; helicase-exonuclease AddAB, AddA subunit
L3_060_043G1_scaffold_29_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14551..15762)
DNA (1212bp) protein (404aa)
PolyA polymerase n=1 Tax=Clostridium sp. CAG:221 RepID=R6GPI8_9CLOT
poly A polymerase head domain protein
Poly A polymerase head domain protein {ECO:0000313|EMBL:AIY82523.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_060_043G1_scaffold_29_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15844..17013)
DNA (1170bp) protein (390aa)
yciB; putative L,D-transpeptidase YciB (EC:2.-.-.-)
Putative L,D-transpeptidase YciB {ECO:0000313|EMBL:AGX41099.1}; EC=2.-.-.- {ECO:0000313|EMBL:AGX41099.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Putative L,D-transpeptidase YciB n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MJW5_CLOSA
L3_060_043G1_scaffold_29_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17161..17964
DNA (804bp) protein (268aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2THD0_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD23390.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_060_043G1_scaffold_29_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18031..19236
DNA (1206bp) protein (402aa)
Exonuclease SbcCD, D subunit n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CNF3_CLOSO
DNA repair exonuclease {ECO:0000313|EMBL:KJU71848.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
sbcD; exonuclease SbcCD, D subunit
L3_060_043G1_scaffold_29_14
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19258..22359
DNA (3102bp) protein (1034aa)
Exonuclease SbcC {ECO:0000313|EMBL:CEN90147.1}; EC=3.1.11.- {ECO:0000313|EMBL:CEN90147.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
AAA domain protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VPH5_CLOBI
AAA domain protein
L3_060_043G1_scaffold_29_15
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22519..23358
DNA (840bp) protein (280aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
resE1; sensor histidine kinase ResE (EC:2.7.13.3)
Histidine kinase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TL63_9CLOT
L3_060_043G1_scaffold_29_16
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23667..24809
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FPP8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG02724.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
L3_060_043G1_scaffold_29_17
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24806..25702)
DNA (897bp) protein (299aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00663, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00663, ECO:0000256|SAAS:SAAS00093350};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
psd; phosphatidylserine decarboxylase proenzyme Psd (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Clostridium sp. 7_2_43FAA RepID=U6Q377_9CLOT
L3_060_043G1_scaffold_29_18
Clostridium paraputrificum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26034..27782
DNA (1749bp) protein (583aa)
iron hydrogenase 1 (EC:1.12.7.2)
Hydrogenase n=1 Tax=Clostridium paraputrificum RepID=Q6F4C7_9CLOT
Hydrogenase {ECO:0000313|EMBL:BAD29951.1}; TaxID=29363 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium paraputrificum.;"
L3_060_043G1_scaffold_29_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27842..28045
DNA (204bp) protein (68aa)
Heavy metal-associated domain protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QKB1_9CLOT
heavy-metal-associated domain protein
Heavy-metal-associated domain protein {ECO:0000313|EMBL:AIY83644.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_060_043G1_scaffold_29_20
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28232..29827)
DNA (1596bp) protein (532aa)
Heme ABC transporter ATP-binding protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FUL3_CLOPA
ABC transporter related {ECO:0000313|EMBL:AJG96716.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
ABC transporter related protein
L3_060_043G1_scaffold_29_21
Clostridium sp. NCR, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30020..30490
DNA (471bp) protein (157aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=1538552 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. NCR.;"
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000361B108
aminoacyl-tRNA editing domain protein
L3_060_043G1_scaffold_29_22
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30587..31234)
DNA (648bp) protein (216aa)
Hemolysin-3 n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UVA8_CLOBO
Hemolysin-3 {ECO:0000313|EMBL:EES48376.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
hemolysin-3
L3_060_043G1_scaffold_29_23
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31449..32033
DNA (585bp) protein (195aa)
Putative uncharacterized protein n=2 Tax=Clostridium botulinum E RepID=B2UX72_CLOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EES49926.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_060_043G1_scaffold_29_24
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32034..33734
DNA (1701bp) protein (567aa)
isopentenyl-diphosphate delta-isomerase n=1 Tax=Clostridium botulinum RepID=UPI00031A321A
Isopentenyl-diphosphate delta-isomerase {ECO:0000313|EMBL:KIL08381.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
isopentenyl-diphosphate delta-isomerase
L3_060_043G1_scaffold_29_25
unknown

Not on your lists

33753..34238
DNA (486bp) protein (162aa)

This feature has no annotations

L3_060_043G1_scaffold_29_26
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34271..35614)
DNA (1344bp) protein (448aa)
Membrane protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UVA3_CLOBO
Membrane protein {ECO:0000313|EMBL:EES48456.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
membrane protein
L3_060_043G1_scaffold_29_27
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35816..36697
DNA (882bp) protein (294aa)
Hydrolase, Cof family n=2 Tax=Clostridium botulinum E RepID=B2UYQ1_CLOBA
hydrolase, Cof family
Hydrolase, Cof family {ECO:0000313|EMBL:EES50988.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_060_043G1_scaffold_29_28
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36807..37649
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MNV9_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX42208.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_060_043G1_scaffold_29_29
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37785..39197
DNA (1413bp) protein (471aa)
6-phospho-beta-glucosidase n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FRP3_CLOPA
6-phospho-beta-glucosidase {ECO:0000313|EMBL:KJU71588.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
glycoside hydrolase family protein
L3_060_043G1_scaffold_29_30
unknown

Not on your lists

comp(39753..39848)
DNA (96bp) protein (32aa)

This feature has no annotations

Displaying items 1-30 of 147 in total

View Taxonomy