ggKbase home page

L3_060_043G1_scaffold_335

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_043G1_scaffold_335_1
Tatumella morbirosei, Tatumella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..95
DNA (93bp) protein (31aa)
Elongation factor Tu n=1 Tax=Tolumonas auensis (strain DSM 9187 / TA4) RepID=C4LBU3_TOLAT
tuf; translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=642227 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Tatumella.;" source="Tatumella morbirosei.;"
L3_060_043G1_scaffold_335_2
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

355..738
DNA (384bp) protein (128aa)
Protein translocase subunit SecE n=4 Tax=Serratia marcescens RepID=L7ZHX1_SERMA
secE; preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=615 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens.;"
L3_060_043G1_scaffold_335_3
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

740..1285
DNA (546bp) protein (182aa)
Transcription termination/antitermination protein NusG n=6 Tax=Serratia RepID=L7ZFX8_SERMA
nusG; transcription termination factor
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_060_043G1_scaffold_335_4
Serratia grimesii, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1451..1879
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=5 Tax=Serratia RepID=L7Z9S8_SERMA
50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=82995 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia grimesii.;"
L3_060_043G1_scaffold_335_5
Serratia nematodiphila, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1883..2587
DNA (705bp) protein (235aa)
50S ribosomal protein L1 n=3 Tax=Serratia marcescens RepID=L7ZG02_SERMA
rplA; 50S ribosomal subunit protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=458197 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia nematodiphila.;"
L3_060_043G1_scaffold_335_6
Serratia nematodiphila, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2926..3423
DNA (498bp) protein (166aa)
50S ribosomal protein L10 n=4 Tax=Serratia marcescens RepID=L7ZEF4_SERMA
rplJ; 50S ribosomal subunit protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=458197 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia nematodiphila.;"
L3_060_043G1_scaffold_335_7
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3487..3852
DNA (366bp) protein (122aa)
50S ribosomal protein L7/L12 n=3 Tax=Serratia marcescens RepID=M3C5K4_SERMA
50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=615 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens.;"
L3_060_043G1_scaffold_335_8
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4185..8213
DNA (4029bp) protein (1343aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=3 Tax=Serratia marcescens RepID=L7ZHX3_SERMA
L3_060_043G1_scaffold_335_9
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8332..12486
DNA (4155bp) protein (1385aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Serratia marcescens EGD-HP20 RepID=U1UHJ2_SERMA
L3_060_043G1_scaffold_335_10
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12655..13101
DNA (447bp) protein (149aa)
acetyltransferase n=1 Tax=Serratia marcescens RepID=UPI00030232E8
GCN5-like N-acetyltransferase
Uncharacterized protein {ECO:0000313|EMBL:EZQ56488.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_060_043G1_scaffold_335_11
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13101..13565
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Serratia marcescens RepID=UPI0002E66E00
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZQ56489.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_060_043G1_scaffold_335_12
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13567..14841
DNA (1275bp) protein (425aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
Two-component system sensor kinase n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A587_SERMA
integral membrane sensor signal transduction histidine kinase
L3_060_043G1_scaffold_335_13
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14827..15606)
DNA (780bp) protein (260aa)
Two-component system response regulator n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A5E5_SERMA
Uncharacterized protein {ECO:0000313|EMBL:EZQ56491.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
hypothetical protein
L3_060_043G1_scaffold_335_14
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16339..17472)
DNA (1134bp) protein (378aa)
Thiamine biosynthesis protein ThiH n=1 Tax=Serratia marcescens VGH107 RepID=M3BLR5_SERMA
thiH; thiamine biosynthesis protein ThiH
2-iminoacetate synthase {ECO:0000313|EMBL:EZQ56493.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_060_043G1_scaffold_335_15
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17472..18251)
DNA (780bp) protein (260aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=615 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens.;"
Thiamin biosynthesis ThiGH complex subunit n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A592_SERMA
thiG; thiazole synthase
L3_060_043G1_scaffold_335_16
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18253..18453)
DNA (201bp) protein (67aa)
Sulphur carrier protein n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A5F0_SERMA
thiS; sulphur carrier protein
Sulphur carrier protein {ECO:0000313|EMBL:BAO36150.1}; TaxID=1334564 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens SM39.;"
L3_060_043G1_scaffold_335_17
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18450..19199)
DNA (750bp) protein (250aa)
Sulfur carrier protein ThiS adenylyltransferase n=2 Tax=Serratia marcescens RepID=M3C5J5_SERMA
Thiamin (Thiazole moiety) biosynthesis protein {ECO:0000313|EMBL:EZQ56496.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
UBA/THIF-type NAD/FAD binding protein
L3_060_043G1_scaffold_335_18
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19192..19842)
DNA (651bp) protein (217aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase n=1 Tax=Serratia marcescens EGD-HP20 RepID=U1U174_SERMA
L3_060_043G1_scaffold_335_19
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19835..21778)
DNA (1944bp) protein (648aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=435998 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens WW4.;"
Phosphomethylpyrimidine synthase n=1 Tax=Serratia marcescens WW4 RepID=L7ZFZ0_SERMA
thiamine biosynthesis protein ThiC
L3_060_043G1_scaffold_335_20
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22057..22560)
DNA (504bp) protein (168aa)
anti-RNA polymerase sigma 70 factor n=1 Tax=Serratia marcescens RepID=UPI00031DBBA5
anti-RNA polymerase sigma 70 factor
Regulator of sigma D {ECO:0000256|HAMAP-Rule:MF_01181, ECO:0000256|SAAS:SAAS00010112}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_060_043G1_scaffold_335_21
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22635..23429
DNA (795bp) protein (265aa)
NADH pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00297, ECO:0000256|SAAS:SAAS00016168}; EC=3.6.1.22 {ECO:0000256|HAMAP-Rule:MF_00297, ECO:0000256|SAAS:SAAS00016202};; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
NADH pyrophosphatase n=1 Tax=Serratia marcescens WW4 RepID=L7ZG13_SERMA
nudC; NADH pyrophosphatase
L3_060_043G1_scaffold_335_22
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23468..24532
DNA (1065bp) protein (355aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=615 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens.;"
Uroporphyrinogen decarboxylase n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A670_SERMA
hemE; uroporphyrinogen decarboxylase
L3_060_043G1_scaffold_335_23
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24542..25228
DNA (687bp) protein (229aa)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801};; Deoxyinosine 3'endonuclease {ECO:0000256|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
endonuclease V (EC:3.1.21.7)
endonuclease VIII n=1 Tax=Serratia marcescens RepID=UPI0002E73DE1
L3_060_043G1_scaffold_335_24
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25277..25867
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A5V5_SERMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZQ56503.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
L3_060_043G1_scaffold_335_25
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26057..26329
DNA (273bp) protein (91aa)
DNA-binding protein HU-alpha n=11 Tax=Serratia RepID=DBHA_SERMA
histone family protein DNA-binding protein
HU, DNA-binding transcriptional regulator, alpha subunit {ECO:0000313|EMBL:BAO36141.1}; TaxID=1334564 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens SM39.;"
L3_060_043G1_scaffold_335_26
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26366..27037
DNA (672bp) protein (224aa)
Uncharacterized protein n=2 Tax=Serratia marcescens RepID=L7ZG16_SERMA
Uncharacterized protein {ECO:0000313|EMBL:EZQ56505.1}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
hypothetical protein
L3_060_043G1_scaffold_335_27
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27087..28370)
DNA (1284bp) protein (428aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1445865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens BIDMC 81.;"
Phosphoribosylamine--glycine ligase n=1 Tax=Serratia marcescens VGH107 RepID=M3C5I6_SERMA
L3_060_043G1_scaffold_335_28
Serratia marcescens, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28419..30008)
DNA (1590bp) protein (530aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:3.5.4.10)
Fused IMPcyclohydrolase/phosphoribosylaminoimidazolecarboxamideformyltransferase n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A622_SERMA
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=615 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens.;"
Displaying 28 items

View Taxonomy