ggKbase home page

L3_060_052G1_scaffold_132

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_052G1_scaffold_132_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(618..1022)
DNA (405bp) protein (135aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7CZH9_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIA15930.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_060_052G1_scaffold_132_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1082..1474)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XHK8_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB82181.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_060_052G1_scaffold_132_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1498..1872)
DNA (375bp) protein (125aa)
Spore cortex biosynthesis protein YabQ n=4 Tax=Clostridium perfringens RepID=Q0TMH6_CLOP1
yabQ; spore cortex biosynthesis protein YabQ
Spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:EDT27241.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_060_052G1_scaffold_132_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1882..2181)
DNA (300bp) protein (100aa)
Sporulation protein YabP n=4 Tax=Clostridium perfringens RepID=H7CZI2_CLOPF
yabP; sporulation protein YabP
Sporulation protein YabP {ECO:0000313|EMBL:EIA15933.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_060_052G1_scaffold_132_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2312..2572)
DNA (261bp) protein (87aa)
S4 domain-containing protein n=7 Tax=Clostridium perfringens RepID=H7CZI3_CLOPF
S4 domain-containing protein
S4 domain-containing protein {ECO:0000313|EMBL:EIA15934.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_060_052G1_scaffold_132_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2680..2955)
DNA (276bp) protein (92aa)
DNA-binding protein HU n=8 Tax=Clostridium perfringens RepID=H7CZI4_CLOPF
hup; DNA-binding protein HU
Probable DNA binding protein {ECO:0000313|EMBL:BAB82185.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_060_052G1_scaffold_132_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3172..4623)
DNA (1452bp) protein (484aa)
MazG family protein n=2 Tax=Clostridium perfringens RepID=B1BS93_CLOPF
MazG family protein {ECO:0000313|EMBL:EDT15346.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
nucleotide pyrophosphohydrolase
L3_060_052G1_scaffold_132_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4653..6185)
DNA (1533bp) protein (511aa)
Stage V sporulation protein B n=2 Tax=Clostridium perfringens RepID=B1BS94_CLOPF
Stage V sporulation protein B {ECO:0000313|EMBL:EDT15343.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
spoVB; stage V sporulation protein B
L3_060_052G1_scaffold_132_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6378..6926)
DNA (549bp) protein (183aa)
Stage V sprulation protein T n=5 Tax=Clostridium perfringens RepID=Q0SQ69_CLOPS
spoVT; stage V sprulation protein T
Stage V sprulation protein T {ECO:0000313|EMBL:EDT24336.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_060_052G1_scaffold_132_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7121..8149)
DNA (1029bp) protein (343aa)
prsA; peptidyl-prolyl isomerase (EC:5.2.1.8)
Foldase protein PrsA {ECO:0000255|HAMAP-Rule:MF_01145}; EC=5.2.1.8 {ECO:0000255|HAMAP-Rule:MF_01145};; Flags: Precursor;; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
Foldase protein PrsA n=3 Tax=Clostridium perfringens RepID=H1CVG1_CLOPF
L3_060_052G1_scaffold_132_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8250..11738)
DNA (3489bp) protein (1163aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Transcription-repair-coupling factor n=2 Tax=Clostridium perfringens RepID=B1BS97_CLOPF
mfd; transcription-repair coupling factor
L3_060_052G1_scaffold_132_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11787..12353)
DNA (567bp) protein (189aa)
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Peptidyl-tRNA hydrolase n=10 Tax=Clostridium perfringens RepID=PTH_CLOP1
L3_060_052G1_scaffold_132_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12386..13636)
DNA (1251bp) protein (417aa)
PDZ domain protein n=3 Tax=Clostridium perfringens RepID=H7CZJ1_CLOPF
PDZ domain protein {ECO:0000313|EMBL:EIA15912.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
PDZ domain-containing protein
L3_060_052G1_scaffold_132_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13657..15066)
DNA (1410bp) protein (470aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Sensor histidine kinase n=2 Tax=Clostridium perfringens RepID=B1BSA0_CLOPF
two-component sensor histidine kinase
L3_060_052G1_scaffold_132_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15066..15752)
DNA (687bp) protein (229aa)
DNA-binding response regulator n=6 Tax=Clostridium perfringens RepID=H7CZJ3_CLOPF
DNA-binding response regulator {ECO:0000313|EMBL:EIA15914.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
DNA-binding response regulator
L3_060_052G1_scaffold_132_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16024..16983)
DNA (960bp) protein (320aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Ribose-phosphate pyrophosphokinase n=9 Tax=Clostridium perfringens RepID=KPRS_CLOPE
prs; ribose-phosphate pyrophosphokinase
L3_060_052G1_scaffold_132_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17040..18497)
DNA (1458bp) protein (486aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase (EC:2.3.1.157 2.7.7.23)
Bifunctional protein GlmU n=3 Tax=Clostridium perfringens RepID=GLMU_CLOP1
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_060_052G1_scaffold_132_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18614..18886)
DNA (273bp) protein (91aa)
Putative septation protein SpoVG n=10 Tax=Clostridium perfringens RepID=SP5G_CLOP1
regulatory protein SpoVG
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_060_052G1_scaffold_132_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18997..19800)
DNA (804bp) protein (268aa)
Pur operon repressor n=8 Tax=Clostridium perfringens RepID=H7CZJ7_CLOPF
purR; pur operon repressor
Pur operon repressor {ECO:0000313|EMBL:EIA15797.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_060_052G1_scaffold_132_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20161..21534
DNA (1374bp) protein (458aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=3 Tax=Clostridium perfringens RepID=MURC_CLOP1
L3_060_052G1_scaffold_132_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21746..22765
DNA (1020bp) protein (340aa)
Sugar-binding transcriptional regulator, LacI family n=9 Tax=Clostridium perfringens RepID=Q0TMF9_CLOP1
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EDT15380.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_060_052G1_scaffold_132_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22881..23699
DNA (819bp) protein (273aa)
punA; purine nucleoside phosphorylase (EC:2.4.2.1)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Purine nucleoside phosphorylase n=8 Tax=Clostridium perfringens RepID=H7CZK0_CLOPF
L3_060_052G1_scaffold_132_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23779..25005
DNA (1227bp) protein (409aa)
NupC family nucleoside transporter n=8 Tax=Clostridium perfringens RepID=H7CZK1_CLOPF
NupC family nucleoside transporter
Nucleoside permease {ECO:0000256|RuleBase:RU362018}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_060_052G1_scaffold_132_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25081..26157)
DNA (1077bp) protein (359aa)
Metallopeptidase, family M24 n=3 Tax=Clostridium perfringens RepID=Q0TMF6_CLOP1
M24 family metallopeptidase
Metallopeptidase, family M24 {ECO:0000313|EMBL:EDT24264.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_060_052G1_scaffold_132_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26325..27023
DNA (699bp) protein (233aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Ser/Thr protein phosphatase family protein n=4 Tax=Clostridium perfringens RepID=Q0TMF5_CLOP1
Ser/Thr protein phosphatase
L3_060_052G1_scaffold_132_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27160..28374)
DNA (1215bp) protein (405aa)
Heme/steroid binding domain-containing protein n=1 Tax=Clostridium perfringens F262 RepID=H7CZK4_CLOPF
Heme/steroid binding domain-containing protein {ECO:0000313|EMBL:EIA15804.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
heme/steroid binding domain-containing protein
L3_060_052G1_scaffold_132_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28786..30183
DNA (1398bp) protein (466aa)
asnC; asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Asparagine--tRNA ligase n=9 Tax=Clostridium perfringens RepID=SYN_CLOP1
L3_060_052G1_scaffold_132_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30564..32045)
DNA (1482bp) protein (494aa)
leucyl aminopeptidase (EC:3.4.11.1)
Probable cytosol aminopeptidase n=1 Tax=Clostridium perfringens F262 RepID=H7CZK6_CLOPF
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_060_052G1_scaffold_132_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32194..32745)
DNA (552bp) protein (184aa)
Uncharacterized protein n=9 Tax=Clostridium perfringens RepID=H7CZK7_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT15403.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_060_052G1_scaffold_132_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32875..33384)
DNA (510bp) protein (170aa)
nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=8 Tax=Clostridium perfringens RepID=H7CZK8_CLOPF
Displaying items 1-30 of 79 in total

View Taxonomy