ggKbase home page

L3_060_052G1_scaffold_155

Search features with annotation key words

Displaying items 1-30 of 101 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_052G1_scaffold_155_1
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(236..1081)
DNA (846bp) protein (282aa)
Transcriptional regulator, AraC family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q9G4_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ERK52749.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
two-component response regulator
L3_060_052G1_scaffold_155_2
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1196..2584)
DNA (1389bp) protein (463aa)
Transporter, major facilitator family protein n=3 Tax=Clostridiales RepID=U2PQE4_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:ERK52750.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L3_060_052G1_scaffold_155_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2591..5656)
DNA (3066bp) protein (1022aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Beta galactosidase small chain n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2Q8P2_9FIRM
Beta-galactosidase/beta-glucuronidase
L3_060_052G1_scaffold_155_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5870..6715)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FT76_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80770.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
membrane associated protein
L3_060_052G1_scaffold_155_5
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6877..7740
DNA (864bp) protein (288aa)
Transcriptional regulator, AraC family n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RPW5_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ERK52757.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
AraC-type DNA-binding domain-containing proteins
L3_060_052G1_scaffold_155_6
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7912..8799
DNA (888bp) protein (296aa)
TnpX site-specific recombinase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PBT8_9FIRM
TnpX site-specific recombinase {ECO:0000313|EMBL:EDS11063.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
hypothetical protein
L3_060_052G1_scaffold_155_7
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8961..10436)
DNA (1476bp) protein (492aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NA05_9FIRM
tRNA-i(6)A37 thiotransferase enzyme MiaB
L3_060_052G1_scaffold_155_8
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10514..10960)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9K9Q7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS43078.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
hypothetical protein
L3_060_052G1_scaffold_155_9
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11136..11387
DNA (252bp) protein (84aa)
Response regulator receiver domain protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZPI0_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EDM88776.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L3_060_052G1_scaffold_155_10
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11306..11857)
DNA (552bp) protein (184aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NKJ2_9FIRM
L3_060_052G1_scaffold_155_11
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11835..12056)
DNA (222bp) protein (74aa)
UPF0291 protein BLAHAN_04734 n=3 Tax=Lachnospiraceae RepID=C9L5S7_BLAHA
UPF0291 protein BN627_00122 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
hypothetical protein
L3_060_052G1_scaffold_155_12
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12072..12926)
DNA (855bp) protein (285aa)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase n=3 Tax=Lachnospiraceae RepID=C9L5S6_BLAHA
L3_060_052G1_scaffold_155_13
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13008..13496)
DNA (489bp) protein (163aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=C9L5S5_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:EEX22507.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
hypothetical protein
L3_060_052G1_scaffold_155_14
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13579..14073)
DNA (495bp) protein (165aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
Endoribonuclease YbeY n=3 Tax=Lachnospiraceae RepID=C9L5S4_BLAHA
hypothetical protein
L3_060_052G1_scaffold_155_15
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(14076..15095)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RSY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46221.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Phosphate starvation-inducible protein PhoH, predicted ATPase
L3_060_052G1_scaffold_155_16
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(15088..16317)
DNA (1230bp) protein (410aa)
Putative sporulation protein YqfD n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6SHV5_9FIRM
Putative sporulation protein YqfD {ECO:0000313|EMBL:CDC46222.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Putative stage IV sporulation protein YqfD.
L3_060_052G1_scaffold_155_17
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16331..16606)
DNA (276bp) protein (92aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=R6NCF1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC08855.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
YabP family.
L3_060_052G1_scaffold_155_18
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16646..17185)
DNA (540bp) protein (180aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=C9L5S0_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:EEX22502.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
Predicted metal-binding protein
L3_060_052G1_scaffold_155_19
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

17285..17737
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RBK1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC42654.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Protein of unknown function (DUF2726).
L3_060_052G1_scaffold_155_20
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(18467..21880)
DNA (3414bp) protein (1138aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RLP2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46234.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
ATPase involved in DNA repair
L3_060_052G1_scaffold_155_21
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21846..23087)
DNA (1242bp) protein (414aa)
Exodeoxyribonuclease I subunit D (EC:3.1.11.1)
Exonuclease SbcCD, D subunit n=3 Tax=Lachnospiraceae RepID=C9L5R8_BLAHA
Uncharacterized protein {ECO:0000313|EMBL:EGG81977.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
L3_060_052G1_scaffold_155_22
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23256..24005
DNA (750bp) protein (250aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
Prolipoprotein diacylglyceryl transferase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5R6_BLAHA
prolipoprotein diacylglyceryl transferase
L3_060_052G1_scaffold_155_23
unknown

Not on your lists

24074..24178
DNA (105bp) protein (35aa)

This feature has no annotations

L3_060_052G1_scaffold_155_24
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(24255..24917)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RLQ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46244.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Uncharacterised protein family (UPF0153).
L3_060_052G1_scaffold_155_25
unknown

Not on your lists

comp(24945..25415)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000364FE02
L3_060_052G1_scaffold_155_26
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(25443..27461)
DNA (2019bp) protein (673aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
Putative DNA helicase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RLQ7_9FIRM
L3_060_052G1_scaffold_155_27
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27476..28648)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2AUQ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ32967.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
major facilitator superfamily protein
L3_060_052G1_scaffold_155_28
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(28836..29849)
DNA (1014bp) protein (338aa)
Predicted oxidoreductase aldo/keto reductase family with a ferredoxin domain n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RLS3_9FIRM
Predicted oxidoreductase aldo/keto reductase family with a ferredoxin domain {ECO:0000313|EMBL:CDC46264.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
NADP-dependent oxidoreductase domain containing protein
L3_060_052G1_scaffold_155_29
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(29883..30182)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RBH0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46268.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Stress responsive A/B Barrel Domain.
L3_060_052G1_scaffold_155_30
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30265..31326)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NH45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC10485.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
hypothetical protein
Displaying items 1-30 of 101 in total

View Taxonomy