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L3_060_052G1_scaffold_188

Search features with annotation key words

Displaying items 1-30 of 114 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_052G1_scaffold_188_1
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..169)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YP58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD59327.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
L3_060_052G1_scaffold_188_2
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(175..972)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6N6F3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG83913.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
Putative transposase, YhgA-like.
L3_060_052G1_scaffold_188_3
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1318..2721)
DNA (1404bp) protein (468aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JLX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN38116.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
glycoside hydrolase family protein
L3_060_052G1_scaffold_188_4
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2764..3609)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00037C0764
ABC transporter permease {ECO:0000313|EMBL:KEZ90156.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
ABC transporter, permease protein, probably Saturated and unsaturated oligogalacturonide transporter
L3_060_052G1_scaffold_188_5
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3615..4526)
DNA (912bp) protein (304aa)
Multiple sugar ABC transporter permease n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W6N1_9CLOT
Carbohydrate ABC transporter membrane protein 1, CUT1 family {ECO:0000313|EMBL:EXG85081.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
ABC transporter, permease protein, probably Saturated and unsaturated oligogalacturonide transporter
L3_060_052G1_scaffold_188_6
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4548..5870)
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=R0APP7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ34734.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
ABC transporter, extracellular substrate binding protein
L3_060_052G1_scaffold_188_7
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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6075..7868
DNA (1794bp) protein (598aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KFD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN35333.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
histidine kinase
L3_060_052G1_scaffold_188_8
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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7846..9390
DNA (1545bp) protein (515aa)
Two-component system, response regulator YesN n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KFD6_9FIRM
Two-component system, response regulator YesN {ECO:0000313|EMBL:EGN35334.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
two component transcriptional regulator, AraC family
L3_060_052G1_scaffold_188_9
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9519..11729)
DNA (2211bp) protein (737aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6ECJ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA97580.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
beta-glucosidase
L3_060_052G1_scaffold_188_10
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11734..13140)
DNA (1407bp) protein (469aa)
Transporter, major facilitator family protein n=3 Tax=Lachnospiraceae RepID=C9LA87_BLAHA
Glucuronide permease {ECO:0000313|EMBL:CDC08281.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
transporter, major facilitator family protein
L3_060_052G1_scaffold_188_11
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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13321..14457
DNA (1137bp) protein (379aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JLQ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN38032.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
two-component system, response regulator YesN
L3_060_052G1_scaffold_188_12
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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14564..16828
DNA (2265bp) protein (755aa)
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.23)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AIQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG88133.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
L3_060_052G1_scaffold_188_13
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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comp(16880..17647)
DNA (768bp) protein (256aa)
hydrolase, TatD family (EC:3.1.21.-)
Hydrolase TatD family n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6SA73_9FIRM
Hydrolase TatD family {ECO:0000313|EMBL:CDC43502.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L3_060_052G1_scaffold_188_14
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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comp(17637..18770)
DNA (1134bp) protein (378aa)
Putative membrane protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RKH5_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDC43501.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Predicted permease
L3_060_052G1_scaffold_188_15
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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comp(18791..21400)
DNA (2610bp) protein (870aa)
ATPase, P-type (transporting), HAD superfamily, subfamily IC (EC:3.6.3.8)
Calcium-transporting ATPase P-type HADfamily subfamily IC n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6R6H8_9FIRM
Calcium-transporting ATPase P-type HADfamily subfamily IC {ECO:0000313|EMBL:CDC43500.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L3_060_052G1_scaffold_188_16
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21693..23945)
DNA (2253bp) protein (751aa)
Glycosyl hydrolase, family 31 {ECO:0000313|EMBL:EFC97395.1}; EC=3.2.1.- {ECO:0000313|EMBL:EFC97395.1};; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
Glycosyl hydrolase, family 31 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3ALA4_9CLOT
alpha-glucosidase
L3_060_052G1_scaffold_188_17
Firmicutes bacterium CAG:534, Firmicutes, Bacteria

Not on your lists

comp(23987..26194)
DNA (2208bp) protein (736aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Glycoside hydrolase family 3 domain protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZIZ2_9FIRM
Glycoside hydrolase family 3 domain protein {ECO:0000313|EMBL:CDD48458.1}; TaxID=1263027 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:534.;"
L3_060_052G1_scaffold_188_18
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26261..28384)
DNA (2124bp) protein (708aa)
Glycoside hydrolase clan GH-D n=1 Tax=Roseburia sp. CAG:182 RepID=R7QX41_9FIRM
Glycoside hydrolase clan GH-D {ECO:0000313|EMBL:CDF42238.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
glycoside hydrolase clan GH-D
L3_060_052G1_scaffold_188_19
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28393..29262)
DNA (870bp) protein (290aa)
Putative ABC transporter permease protein ORF2 n=1 Tax=Roseburia sp. CAG:182 RepID=R7R256_9FIRM
Putative ABC transporter permease protein ORF2 {ECO:0000313|EMBL:CDF43630.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
ABC transporter permease
L3_060_052G1_scaffold_188_20
Roseburia sp. CAG:182, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29269..30156)
DNA (888bp) protein (296aa)
ABC-type sugar transport system permease component n=1 Tax=Roseburia sp. CAG:182 RepID=R7QZH6_9FIRM
ABC-type sugar transport system permease component {ECO:0000313|EMBL:CDF43629.1}; TaxID=1262942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:182.;"
ABC transporter permease
L3_060_052G1_scaffold_188_21
Firmicutes bacterium CAG:791, Firmicutes, Bacteria

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comp(30223..31659)
DNA (1437bp) protein (479aa)
Putative bacterial extracellular solute-binding protein n=1 Tax=Firmicutes bacterium CAG:791 RepID=R5CBS2_9FIRM
Putative bacterial extracellular solute-binding protein {ECO:0000313|EMBL:CCX65415.1}; TaxID=1262993 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:791.;"
ABC transporter substrate-binding protein
L3_060_052G1_scaffold_188_22
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31752..32933)
DNA (1182bp) protein (394aa)
Transcriptional regulator (LacI family) n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TGE6_9FIRM
Transcriptional regulator (LacI family) {ECO:0000313|EMBL:CDC71320.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
transcriptional regulator, LacI family
L3_060_052G1_scaffold_188_23
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33202..35637
DNA (2436bp) protein (812aa)
cellobiose phosphorylase (EC:2.4.1.20)
Cellobiose phosphorylase Cbp94A n=1 Tax=Roseburia sp. CAG:100 RepID=R7R7G7_9FIRM
Cellobiose phosphorylase Cbp94A {ECO:0000313|EMBL:CDF46659.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
L3_060_052G1_scaffold_188_24
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35684..38173
DNA (2490bp) protein (830aa)
glycoside hydrolase n=1 Tax=Dorea sp. 5-2 RepID=UPI0003B72A9A
Uncharacterized protein {ECO:0000313|EMBL:EOS80819.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
beta-mannosidase
L3_060_052G1_scaffold_188_25
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists


comp(38374..40341)
DNA (1968bp) protein (656aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RDY7_9FIRM
L3_060_052G1_scaffold_188_26
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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comp(40745..40972)
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI0003711711
Uncharacterized protein {ECO:0000313|EMBL:CDC94477.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
PTS HPr component phosphorylation site.
L3_060_052G1_scaffold_188_27
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(41089..42432)
DNA (1344bp) protein (448aa)
Amino acid carrier protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L9E8_BLAHA
Amino acid carrier protein {ECO:0000313|EMBL:EEX21294.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
putative sodium/amino acid symporter
L3_060_052G1_scaffold_188_28
unknown

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comp(42437..42691)
DNA (255bp) protein (85aa)

This feature has no annotations

L3_060_052G1_scaffold_188_29
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(42851..44161)
DNA (1311bp) protein (437aa)
MATE efflux family protein n=3 Tax=Lachnospiraceae RepID=C9L850_BLAHA
MATE efflux family protein {ECO:0000313|EMBL:EEX21542.1}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
MATE efflux family protein
L3_060_052G1_scaffold_188_30
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(44229..45032)
DNA (804bp) protein (268aa)
ABC transporter, ATP-binding protein n=2 Tax=Coprococcus RepID=C0BEN1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEG88308.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
ABC-type uncharacterized transport system, ATPase component
Displaying items 1-30 of 114 in total

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