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L3_060_052G1_scaffold_263

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_052G1_scaffold_263_1
Erwinia billingiae, Erwinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..76)
DNA (75bp) protein (25aa)
Cold-shock protein n=3 Tax=Erwinia RepID=D0FQF6_ERWPE
cold-shock protein
Putative cold-shock protein {ECO:0000313|EMBL:CAX60229.1}; TaxID=634500 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Erwinia.;" source="Erwinia billingiae (strain Eb661).;"
L3_060_052G1_scaffold_263_2
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(163..408)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H296_SHIFL
Uncharacterized protein {ECO:0000313|EMBL:CEJ66309.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
hypothetical protein
L3_060_052G1_scaffold_263_3
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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815..1591
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M7G1_9ENTR
Beta-lactamase-like protein {ECO:0000313|EMBL:ETX64847.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
hypothetical protein
L3_060_052G1_scaffold_263_4
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1610..2560
DNA (951bp) protein (317aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H294_SHIFL
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:CEJ66311.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
AraC family transcriptional regulator
L3_060_052G1_scaffold_263_5
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2557..3165)
DNA (609bp) protein (203aa)
Methyltransferase type 11 n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QRW7_CITFR
Methyltransferase {ECO:0000313|EMBL:CEJ66312.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
methyltransferase
L3_060_052G1_scaffold_263_6
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3329..4414
DNA (1086bp) protein (362aa)
Lactose operon repressor n=1 Tax=Shigella flexneri 1235-66 RepID=I6H290_SHIFL
Lactose operon repressor {ECO:0000313|EMBL:EIQ74882.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
lacI; lac repressor
L3_060_052G1_scaffold_263_7
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4521..7598
DNA (3078bp) protein (1026aa)
Beta-galactosidase {ECO:0000256|HAMAP-Rule:MF_01687, ECO:0000256|SAAS:SAAS00046613}; Short=Beta-gal {ECO:0000256|HAMAP-Rule:MF_01687};; EC=3.2.1.23 {ECO:0000256|HAMAP-Rule:MF_01687, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|HAMAP-Rule:MF_01687}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
lacZ; beta-D-galactosidase (EC:3.2.1.23)
Beta-galactosidase n=1 Tax=Shigella flexneri 1235-66 RepID=I6H289_SHIFL
L3_060_052G1_scaffold_263_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7699..9585)
DNA (1887bp) protein (629aa)
Propionyl-CoA synthetase {ECO:0000313|EMBL:KJC04626.1}; EC=6.2.1.17 {ECO:0000313|EMBL:KJC04626.1};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
prpE; propionyl-CoA synthetase (EC:6.2.1.17)
Propionyl-CoA synthetase n=2 Tax=Citrobacter RepID=K8QRX2_CITFR
L3_060_052G1_scaffold_263_9
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9626..11077)
DNA (1452bp) protein (484aa)
2-methylcitrate dehydratase {ECO:0000313|EMBL:EIQ74879.1}; EC=4.2.1.79 {ECO:0000313|EMBL:EIQ74879.1};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
prpD; 2-methylcitrate dehydratase (EC:4.2.1.79)
2-methylcitrate dehydratase n=1 Tax=Shigella flexneri 1235-66 RepID=I6H287_SHIFL
L3_060_052G1_scaffold_263_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11118..12287)
DNA (1170bp) protein (390aa)
methylcitrate synthase (EC:2.3.3.5)
Citrate synthase n=1 Tax=Citrobacter sp. KTE30 RepID=R8UX65_9ENTR
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
L3_060_052G1_scaffold_263_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12368..13249)
DNA (882bp) protein (294aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
prpB; 2-methylisocitrate lyase (EC:4.1.3.30)
2-methylisocitrate lyase n=6 Tax=Citrobacter RepID=J0M836_9ENTR
L3_060_052G1_scaffold_263_12
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13502..15097
DNA (1596bp) protein (532aa)
Propionate catabolism operon regulatory protein PrpR n=1 Tax=Shigella flexneri 1235-66 RepID=I6H284_SHIFL
Propionate catabolism operon regulatory protein PrpR {ECO:0000313|EMBL:EIQ74876.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
propionate catabolism operon regulatory protein PrpR
L3_060_052G1_scaffold_263_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15146..15421)
DNA (276bp) protein (92aa)
Uncharacterized protein n=6 Tax=Citrobacter RepID=K8QRX7_CITFR
Uncharacterized protein {ECO:0000313|EMBL:KEL80572.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hypothetical protein
L3_060_052G1_scaffold_263_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15695..16327
DNA (633bp) protein (211aa)
Homoserine/Threonine efflux protein n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SFW0_CITFR
membrane protein
Membrane protein {ECO:0000313|EMBL:AHY12151.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L3_060_052G1_scaffold_263_15
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16416..17804
DNA (1389bp) protein (463aa)
Diguanylate cyclase domain protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H281_SHIFL
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EIQ74873.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
diguanylate cyclase
L3_060_052G1_scaffold_263_16
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18024..19130
DNA (1107bp) protein (369aa)
Putative electron transport protein yccM n=1 Tax=Shigella flexneri 1235-66 RepID=I6H280_SHIFL
Putative electron transport protein yccM {ECO:0000313|EMBL:EIQ74872.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
electron transporter YccM
L3_060_052G1_scaffold_263_17
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19204..20097)
DNA (894bp) protein (298aa)
SIS domain protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H279_SHIFL
SIS domain protein {ECO:0000313|EMBL:EIQ74871.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
hypothetical protein
L3_060_052G1_scaffold_263_18
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20100..21047)
DNA (948bp) protein (316aa)
Uncharacterized protein n=4 Tax=Citrobacter RepID=R1FQ96_CITFR
Iron complex transport system substrate-binding protein {ECO:0000313|EMBL:ETX72404.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
L3_060_052G1_scaffold_263_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21063..22115)
DNA (1053bp) protein (351aa)
Iron ABC transporter permease n=1 Tax=Citrobacter sp. KTE30 RepID=R8UYW6_9ENTR
Putative permease of ferrichrome ABC transporter {ECO:0000313|EMBL:CDL40522.1}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
hypothetical protein
L3_060_052G1_scaffold_263_20
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22112..23125)
DNA (1014bp) protein (338aa)
Ferric enterobactin transport n=4 Tax=Citrobacter RepID=J0VU62_9ENTR
Iron complex transport system permease {ECO:0000313|EMBL:ETX72402.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
L3_060_052G1_scaffold_263_21
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23122..23949)
DNA (828bp) protein (276aa)
Abc transporter-like protein n=4 Tax=Citrobacter RepID=J0M845_9ENTR
Iron complex transport system ATP-binding protein {ECO:0000313|EMBL:ETX72401.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
L3_060_052G1_scaffold_263_22
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24254..26557
DNA (2304bp) protein (768aa)
Iron compound receptor n=1 Tax=Citrobacter sp. KTE30 RepID=R8UY40_9ENTR
Ferrichrome-iron receptor {ECO:0000313|EMBL:CEJ66329.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
hypothetical protein
L3_060_052G1_scaffold_263_23
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26739..27248
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. KTE151 RepID=R8X3S7_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:CEJ66330.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
hypothetical protein
L3_060_052G1_scaffold_263_24
unknown

Not on your lists

comp(27259..27348)
DNA (90bp) protein (30aa)

This feature has no annotations

L3_060_052G1_scaffold_263_25
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27348..29438)
DNA (2091bp) protein (697aa)
Ferrioxamine B receptor n=1 Tax=Citrobacter sp. KTE32 RepID=R8VMU9_9ENTR
ferrioxamine B receptor
Ferrioxamine B receptor {ECO:0000313|EMBL:AHY12147.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L3_060_052G1_scaffold_263_26
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29578..30561)
DNA (984bp) protein (328aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H269_SHIFL
Bacterial regulatory helix-turn-helix s, AraC family protein {ECO:0000313|EMBL:EIQ74861.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
AraC family transcriptional regulator
L3_060_052G1_scaffold_263_27
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30677..31585)
DNA (909bp) protein (303aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H268_SHIFL
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CEJ66334.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
transcriptional regulator
L3_060_052G1_scaffold_263_28
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31692..32309
DNA (618bp) protein (206aa)
LysE type translocator family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H267_SHIFL
LysE type translocator family protein {ECO:0000313|EMBL:EIQ74859.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
lysine transporter LysE
L3_060_052G1_scaffold_263_29
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32379..32615)
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SFV2_CITFR
Uncharacterized protein {ECO:0000313|EMBL:ETX65355.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
hypothetical protein
L3_060_052G1_scaffold_263_30
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32715..33344)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M7D7_9ENTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHY12143.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
Displaying items 1-30 of 55 in total

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