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L3_060_052G1_scaffold_588

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_052G1_scaffold_588_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..101
DNA (99bp) protein (33aa)
Uncharacterized protein n=7 Tax=Clostridiales RepID=D5Q7G4_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCK92131.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
Helix-turn-helix.
L3_060_052G1_scaffold_588_2
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(427..1788)
DNA (1362bp) protein (454aa)
Na+ driven multidrug efflux pump n=2 Tax=Firmicutes RepID=Q1JB93_STRPB
Na+ driven multidrug efflux pump
Uncharacterized protein {ECO:0000313|EMBL:EGG86052.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L3_060_052G1_scaffold_588_3
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1919..2446
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JVE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS38068.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
transcriptional regulator
L3_060_052G1_scaffold_588_4
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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2564..2863
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Treponema socranskii subsp. paredis ATCC 35535 RepID=S3JNM0_TRESO
Uncharacterized protein {ECO:0000313|EMBL:EPF26036.1}; TaxID=1125701 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. paredis ATCC 35535.;"
hypothetical protein
L3_060_052G1_scaffold_588_5
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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3063..3488
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XM34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07392.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L3_060_052G1_scaffold_588_6
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3481..4479
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WTR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07391.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L3_060_052G1_scaffold_588_7
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4564..4947)
DNA (384bp) protein (128aa)
CHC2 zinc finger domain protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0GA85_9FIRM
CHC2 zinc finger domain protein {ECO:0000313|EMBL:EDR45417.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
DNA primase (bacterial type)
L3_060_052G1_scaffold_588_8
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5103..5831)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RTZ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75311.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
hypothetical protein
L3_060_052G1_scaffold_588_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5911..6108)
DNA (198bp) protein (66aa)
Resolvase, N-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJW4_9FIRM
Site-specific recombinases, DNA invertase Pin homologs
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EEC90682.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_060_052G1_scaffold_588_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6214..6960
DNA (747bp) protein (249aa)
Uncharacterized protein n=3 Tax=Clostridium RepID=R6PTQ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24109.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Acetyltransferase (GNAT) family.
L3_060_052G1_scaffold_588_11
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7155..7760
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VG67_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO57493.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
hypothetical protein
L3_060_052G1_scaffold_588_12
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7861..8439
DNA (579bp) protein (193aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JLI6_9FIRM
sensory transduction histidine kinase
L3_060_052G1_scaffold_588_13
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8447..9139
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2AG65_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJF39302.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ABC transporter ATP-binding protein
L3_060_052G1_scaffold_588_14
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9129..10100
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2ABD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMZ23380.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
efflux ABC transporter permease
L3_060_052G1_scaffold_588_15
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10063..11532
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2ABD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF39303.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ABC-type transport system, involved in lipoprotein release, permease component
L3_060_052G1_scaffold_588_16
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11651..11929
DNA (279bp) protein (93aa)
ABC transporter ATP-binding protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JLS8_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJF39305.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_060_052G1_scaffold_588_17
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11957..12337
DNA (381bp) protein (127aa)
ABC transporter ATP-binding protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JLS8_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EOS35083.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_060_052G1_scaffold_588_18
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12334..14868
DNA (2535bp) protein (845aa)
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2A213_9FIRM
ABC transporter permease {ECO:0000313|EMBL:KJF39306.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ABC transporter permease
L3_060_052G1_scaffold_588_19
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

14942..16153
DNA (1212bp) protein (404aa)
Aspartokinase {ECO:0000256|RuleBase:RU003448}; EC=2.7.2.4 {ECO:0000256|RuleBase:RU003448};; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
aspartate kinase, monofunctional class (EC:2.7.2.4)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000379E81D
L3_060_052G1_scaffold_588_20
unknown

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16181..16285
DNA (105bp) protein (35aa)

This feature has no annotations

L3_060_052G1_scaffold_588_21
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

Not on your lists

16339..16866
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:308 RepID=R7A632_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD50949.1}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
L3_060_052G1_scaffold_588_22
Clostridium sporogenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16883..18010
DNA (1128bp) protein (376aa)
ROK family protein n=1 Tax=Clostridium sporogenes PA 3679 RepID=G9F524_CLOSG
ROK family protein {ECO:0000313|EMBL:EHN13486.1}; TaxID=1075091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sporogenes PA 3679.;"
ROK family protein
L3_060_052G1_scaffold_588_23
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18126..19175
DNA (1050bp) protein (350aa)
sorbitol dehydrogenase (EC:1.1.1.14)
L-iditol 2-dehydrogenase n=2 Tax=Lachnospiraceae RepID=R6GEN9_9FIRM
L-iditol 2-dehydrogenase {ECO:0000313|EMBL:CDB19721.1}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
L3_060_052G1_scaffold_588_24
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

19341..20510
DNA (1170bp) protein (390aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RGU9_9FIRM
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CDC42241.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
23S rRNA (uracil-5-)-methyltransferase RumA
L3_060_052G1_scaffold_588_25
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20801..22297
DNA (1497bp) protein (499aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L8B9_BLAHA
L3_060_052G1_scaffold_588_26
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22365..23234
DNA (870bp) protein (290aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=R6NXK5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC10976.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
Imidazolonepropionase and related amidohydrolases
L3_060_052G1_scaffold_588_27
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23285..24565
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NIF0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC10975.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
amidohydrolase
L3_060_052G1_scaffold_588_28
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(24636..25133)
DNA (498bp) protein (166aa)
ADP-ribose pyrophosphatase (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RLG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC43886.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
L3_060_052G1_scaffold_588_29
Lachnospiraceae bacterium CAG:364, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25130..25714)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:364 RepID=R6NAX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC09238.1}; TaxID=1262983 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:364.;"
RNA-binding protein AU-1/Ribonuclease E/G
L3_060_052G1_scaffold_588_30
Blautia hansenii, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25659..26252)
DNA (594bp) protein (198aa)
Ribonuclease, Rne/Rng family {ECO:0000313|EMBL:EEX21628.1}; EC=3.1.4.- {ECO:0000313|EMBL:EEX21628.1};; TaxID=537007 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia hansenii DSM 20583.;"
Ribonuclease, Rne/Rng family n=2 Tax=Lachnospiraceae RepID=C9L8D6_BLAHA
RNA-binding protein AU-1/Ribonuclease E/G
Displaying items 1-30 of 33 in total

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