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L3_060_057G1_scaffold_40

Search features with annotation key words

Displaying items 1-30 of 128 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_057G1_scaffold_40_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..153)
DNA (153bp) protein (51aa)
ilvB; acetolactate synthase large subunit (EC:2.2.1.6)
Acetolactate synthase large subunit n=3 Tax=Clostridium RepID=E7GTU8_CLOSY
Thiamine pyrophosphate enzyme, TPP binding domain protein {ECO:0000313|EMBL:ERI75405.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
L3_060_057G1_scaffold_40_2
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(208..888)
DNA (681bp) protein (227aa)
Asp/Glu/Hydantoin racemase n=2 Tax=Clostridium symbiosum RepID=E9SSL5_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA91734.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
aspartate racemase
L3_060_057G1_scaffold_40_3
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(964..1908)
DNA (945bp) protein (315aa)
Transketolase, pyridine binding domain protein n=2 Tax=Clostridium RepID=E9SSL6_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF03672.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L3_060_057G1_scaffold_40_4
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1908..2756)
DNA (849bp) protein (283aa)
Transketolase domain-containing protein n=4 Tax=Clostridium RepID=E7GTU5_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF03673.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
transketolase, thiamine diphosphate binding subunit
L3_060_057G1_scaffold_40_5
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3125..4006
DNA (882bp) protein (294aa)
LysR substrate binding domain protein n=4 Tax=Clostridium RepID=E9SSL9_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA91730.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
transcriptional regulator, LysR family
L3_060_057G1_scaffold_40_6
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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4084..4545
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M907_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS67500.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
putative Xre family DNA-binding protein
L3_060_057G1_scaffold_40_7
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4603..6417)
DNA (1815bp) protein (605aa)
carboxylesterase type B (EC:3.1.1.-)
Carboxylesterase type B {ECO:0000313|EMBL:AGF57919.1}; EC=3.1.1.- {ECO:0000313|EMBL:AGF57919.1};; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI00035F1B5D
L3_060_057G1_scaffold_40_8
Coprococcus eutactus CAG:665, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6667..7545
DNA (879bp) protein (293aa)
Transcriptional regulator, AraC family n=2 Tax=Coprococcus RepID=A8SQD4_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CCZ93327.1}; TaxID=1263071 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus eutactus CAG:665.;"
transcriptional regulator, AraC family
L3_060_057G1_scaffold_40_9
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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7585..8715
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2G1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM97548.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_060_057G1_scaffold_40_10
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8779..9678)
DNA (900bp) protein (300aa)
Glutamate formimidoyltransferase {ECO:0000313|EMBL:EJF38923.1}; EC=2.1.2.5 {ECO:0000313|EMBL:EJF38923.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
glutamate formiminotransferase (EC:2.1.2.5)
Glutamate formimidoyltransferase n=1 Tax=Clostridium sp. MSTE9 RepID=J1H124_9CLOT
L3_060_057G1_scaffold_40_11
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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9868..12948
DNA (3081bp) protein (1027aa)
Uncharacterized protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KX13_OSCVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK98428.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L3_060_057G1_scaffold_40_12
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13250..14500
DNA (1251bp) protein (417aa)
ESS family glutamate:sodium symporter n=2 Tax=Clostridium symbiosum RepID=E7GKA8_CLOSY
Sodium/glutamate symporter {ECO:0000313|EMBL:EHF04615.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
sodium--glutamate symport carrier (gltS)
L3_060_057G1_scaffold_40_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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14563..15474
DNA (912bp) protein (304aa)
Glutamate formiminotransferase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZIK8_9FIRM
Glutamate formiminotransferase {ECO:0000313|EMBL:EGJ46504.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative glutamate formimidoyltransferase
L3_060_057G1_scaffold_40_14
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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15505..16131
DNA (627bp) protein (209aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
Methenyltetrahydrofolate cyclohydrolase {ECO:0000313|EMBL:BAK98422.1}; EC=3.5.4.9 {ECO:0000313|EMBL:BAK98422.1};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Methenyltetrahydrofolate cyclohydrolase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KX07_OSCVS
L3_060_057G1_scaffold_40_15
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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16213..16806
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SN62_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ46392.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
hypothetical protein
L3_060_057G1_scaffold_40_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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16861..18534
DNA (1674bp) protein (558aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCF5_9FIRM
L3_060_057G1_scaffold_40_17
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18833..19702
DNA (870bp) protein (290aa)
Bifunctional protein FolD n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FDL0_9CLOT
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L3_060_057G1_scaffold_40_18
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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19699..20529
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZIK6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14405.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
Formate/nitrite family of transporters
L3_060_057G1_scaffold_40_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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20526..21794
DNA (1269bp) protein (423aa)
folC; folylpolyglutamate synthase (EC:6.3.2.17)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46500.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_057G1_scaffold_40_20
Clostridium sp. CAG:452, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21996..22529
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI00037AF0F8
Uncharacterized protein {ECO:0000313|EMBL:CDD26566.1}; TaxID=1262810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:452.;"
folT; Folate ECF transporter S component FolT
L3_060_057G1_scaffold_40_21
unknown

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comp(22610..22750)
DNA (141bp) protein (47aa)

This feature has no annotations

L3_060_057G1_scaffold_40_22
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22893..23600
DNA (708bp) protein (236aa)
Putative response regulator MprA n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BGH1_9CLOT
Putative response regulator MprA {ECO:0000313|EMBL:ERI77194.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
response regulator receiver
L3_060_057G1_scaffold_40_23
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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23597..24892
DNA (1296bp) protein (432aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridiales RepID=G9YX65_9FIRM
integral membrane sensor signal transduction histidine kinase
L3_060_057G1_scaffold_40_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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25175..26320
DNA (1146bp) protein (382aa)
sodium ion-translocating decarboxylase, beta subunit (EC:4.1.1.3)
Oxaloacetate decarboxylase, beta subunit n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBN1_9FIRM
Oxaloacetate decarboxylase, beta subunit {ECO:0000313|EMBL:EGJ47759.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_057G1_scaffold_40_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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26347..26475
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47760.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_057G1_scaffold_40_26
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(26525..26794)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZG16_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13365.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_060_057G1_scaffold_40_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27022..27417
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAY7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47515.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative peptidoglycan binding domain protein
L3_060_057G1_scaffold_40_28
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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27427..28674
DNA (1248bp) protein (416aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YJV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15501.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
iron transporter FeoB
L3_060_057G1_scaffold_40_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28671..29252
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47513.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Putative peptidoglycan-binding domain-containing protein
L3_060_057G1_scaffold_40_30
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29877..31109)
DNA (1233bp) protein (411aa)
Hydrogenase subunit (Ferredoxin) n=1 Tax=Clostridium sp. D5 RepID=F0Z3H4_9CLOT
Hydrogenase subunit (Ferredoxin) {ECO:0000313|EMBL:EGB91238.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
hydrogenase large subunit domain-containing protein
Displaying items 1-30 of 128 in total

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