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L3_060_057G1_scaffold_273

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_057G1_scaffold_273_1
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(113..1624)
DNA (1512bp) protein (504aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Lysyl-tRNA synthetase (class II) (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6R1J0_9FIRM
L3_060_057G1_scaffold_273_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1721..2209)
DNA (489bp) protein (163aa)
Transcription elongation factor GreA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNW1_9FIRM
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcription elongation factor GreA
L3_060_057G1_scaffold_273_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2321..3331)
DNA (1011bp) protein (337aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNW2_9FIRM
L3_060_057G1_scaffold_273_4
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

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comp(3463..3774)
DNA (312bp) protein (104aa)
YbaK/proline--tRNA ligase associated domain protein n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6ESI5_9FIRM
YbaK/proline--tRNA ligase associated domain protein {ECO:0000313|EMBL:CDB00104.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
hypothetical protein
L3_060_057G1_scaffold_273_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4129..4590
DNA (462bp) protein (154aa)
Protein-tyrosine-phosphatase (EC:3.1.3.48)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPG7_9FIRM
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:EFB75429.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_060_057G1_scaffold_273_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4681..6066
DNA (1386bp) protein (462aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H2W7_9FIRM
L3_060_057G1_scaffold_273_7
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6210..7814)
DNA (1605bp) protein (535aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Clostridium sp. CAG:510 RepID=R6CCA7_9CLOT
L3_060_057G1_scaffold_273_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8133..9575)
DNA (1443bp) protein (481aa)
Dipeptidase {ECO:0000313|EMBL:EDP21286.1}; EC=3.4.-.- {ECO:0000313|EMBL:EDP21286.1};; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
dipeptidase A. Cysteine peptidase. MEROPS family C69 (EC:3.4.-.-)
Dipeptidase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SCN0_9FIRM
L3_060_057G1_scaffold_273_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9758..11761)
DNA (2004bp) protein (668aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein (EC:3.1.3.11)
Fructose-1,6-bisphosphatase class 3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PS92_9FIRM
L3_060_057G1_scaffold_273_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11986..12453)
DNA (468bp) protein (156aa)
Hsp20/alpha crystallin family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSC6_9FIRM
Hsp20/alpha crystallin family protein {ECO:0000313|EMBL:EFB74411.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
heat shock protein Hsp20
L3_060_057G1_scaffold_273_11
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

Not on your lists

comp(12779..13774)
DNA (996bp) protein (332aa)
putative L-asparaginase (EC:3.5.1.1)
L-asparaginase n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AR74_9FIRM
L-asparaginase {ECO:0000313|EMBL:CCX45895.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
L3_060_057G1_scaffold_273_12
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13980..16079)
DNA (2100bp) protein (700aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
UvrD/REP helicase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P0W2_9FIRM
hypothetical protein
L3_060_057G1_scaffold_273_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16505..17998
DNA (1494bp) protein (498aa)
Polygalacturonase (Pectinase) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP01_9FIRM
Polygalacturonase (Pectinase) {ECO:0000313|EMBL:EFB75497.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pgl28B; polygalacturonase Pgl28B
L3_060_057G1_scaffold_273_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18133..18639
DNA (507bp) protein (169aa)
Transcriptional regulator, MarR family n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAM9_9FIRM
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EDP21596.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
MarR family transcriptional regulator
L3_060_057G1_scaffold_273_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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18623..20824
DNA (2202bp) protein (734aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPZ7_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB75189.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type multidrug transport system, ATPase and permease components
L3_060_057G1_scaffold_273_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20826..22637
DNA (1812bp) protein (604aa)
ABC transporter, ATP-binding protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAM6_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDP21594.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
ABC-type multidrug transport system, ATPase and permease components
L3_060_057G1_scaffold_273_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22984..23541
DNA (558bp) protein (186aa)
UPF0340 protein SUBVAR_06114 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP00_9FIRM
UPF0340 protein SUBVAR_06114 {ECO:0000256|HAMAP-Rule:MF_00800}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
conserved hypothetical protein TIGR01440
L3_060_057G1_scaffold_273_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23538..24263
DNA (726bp) protein (242aa)
Pyridoxal phosphate enzyme, YggS family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNZ9_9FIRM
Pyridoxal phosphate enzyme, YggS family {ECO:0000313|EMBL:EFB75495.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
pyridoxal phosphate enzyme, YggS family
L3_060_057G1_scaffold_273_19

Not on your lists

comp(24295..25155)
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=uncultured organism RepID=D9ZEB3_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ADD61667.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
AraC-type DNA-binding domain-containing proteins
L3_060_057G1_scaffold_273_20

Not on your lists

25280..27541
DNA (2262bp) protein (754aa)
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Putative carbohydrate-active enzyme n=1 Tax=uncultured organism RepID=D9ZEB2_9ZZZZ
Putative carbohydrate-active enzyme {ECO:0000313|EMBL:ADD61666.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L3_060_057G1_scaffold_273_21

Not on your lists

27723..29654
DNA (1932bp) protein (644aa)
pullulanase, type I (EC:3.2.1.41)
Carbohydrate-active enzyme n=1 Tax=uncultured organism RepID=D9ZEB5_9ZZZZ
Carbohydrate-active enzyme {ECO:0000313|EMBL:ADD61669.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
L3_060_057G1_scaffold_273_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29930..31285
DNA (1356bp) protein (452aa)
Citrate synthase (EC:2.3.3.5 2.3.3.1)
Citrate synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ17_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_060_057G1_scaffold_273_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31524..32522)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIH3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77332.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_060_057G1_scaffold_273_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32512..32997)
DNA (486bp) protein (162aa)
Sigma-70 region 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIH4_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:EFB77333.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ECF subfamily RNA polymerase sigma-24 factor
L3_060_057G1_scaffold_273_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33164..34237)
DNA (1074bp) protein (358aa)
Acyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIH6_9FIRM
Acyltransferase {ECO:0000313|EMBL:EFB77335.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_060_057G1_scaffold_273_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34249..34623)
DNA (375bp) protein (125aa)
Transcriptional regulator, Fur family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIH7_9FIRM
Transcriptional regulator, Fur family {ECO:0000313|EMBL:EFB77336.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ferric uptake regulator, Fur family
L3_060_057G1_scaffold_273_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34810..35352
DNA (543bp) protein (181aa)
Rubrerythrin n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIH8_9FIRM
Rubrerythrin {ECO:0000313|EMBL:EFB77337.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Rubrerythrin
L3_060_057G1_scaffold_273_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35695..36285
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K147_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK99996.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_060_057G1_scaffold_273_29
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36323..36751
DNA (429bp) protein (143aa)
Flavodoxin n=3 Tax=Clostridium PF4_CLOSY">RepID=E9SPF4_CLOSY
Flavodoxin {ECO:0000313|EMBL:EHF07717.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L3_060_057G1_scaffold_273_30
Lachnoanaerobaculum sp. ICM7, Lachnoanaerobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37051..37425
DNA (375bp) protein (125aa)
Heavy metal-associated domain protein n=2 Tax=Clostridiales RepID=J5GQ39_9FIRM
Heavy metal-associated domain protein {ECO:0000313|EMBL:EJP20373.1}; TaxID=936594 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Lachnoanaerobaculum.;" source="Lachnoanaerobaculum sp. ICM7.;"
Heavy-metal-associated domain.
Displaying items 1-30 of 90 in total

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