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L3_060_057G1_scaffold_311

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_057G1_scaffold_311_1
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(3..905)
DNA (903bp) protein (301aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XUA7_9FIRM
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase
L3_060_057G1_scaffold_311_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(930..2684)
DNA (1755bp) protein (585aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9A5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48074.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_057G1_scaffold_311_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2918..3994
DNA (1077bp) protein (359aa)
asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9A6_9FIRM
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EGJ48075.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_057G1_scaffold_311_4
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

4185..5072
DNA (888bp) protein (296aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YCE8_9FIRM
L3_060_057G1_scaffold_311_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5082..5837
DNA (756bp) protein (252aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dapB; 4-hydroxy-tetrahydrodipicolinate reductase (EC:1.17.1.-)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9A8_9FIRM
L3_060_057G1_scaffold_311_6
unknown

Not on your lists

5940..6302
DNA (363bp) protein (121aa)

This feature has no annotations

L3_060_057G1_scaffold_311_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6416..6784
DNA (369bp) protein (123aa)
Desulfoferrodoxin (EC:1.15.1.2)
Desulfoferrodoxin n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RYZ2_9FIRM
Desulfoferrodoxin {ECO:0000313|EMBL:EQN60559.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_057G1_scaffold_311_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6846..7643)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48152.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
N-acetylmuramoyl-L-alanine amidase family 2
L3_060_057G1_scaffold_311_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7768..9087
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48153.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative methionine transporter, NhaC family (TC 2.A.35.1.-)
L3_060_057G1_scaffold_311_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9143..9553)
DNA (411bp) protein (137aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YU39_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM43080.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L3_060_057G1_scaffold_311_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9698..10540)
DNA (843bp) protein (281aa)
folD; Bifunctional protein FolD (EC:1.5.1.5)
Bifunctional protein FolD n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAH3_9FIRM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_057G1_scaffold_311_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10544..11515)
DNA (972bp) protein (324aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
lgt; prolipoprotein diacylglycerol transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAH2_9FIRM
L3_060_057G1_scaffold_311_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11512..12798)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47349.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
M16B family peptidase
L3_060_057G1_scaffold_311_14
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(12802..14085)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YBN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13017.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
peptidase M16B family protein
L3_060_057G1_scaffold_311_15
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(14180..21427)
DNA (7248bp) protein (2416aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2Y9C8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13018.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
carbohydrate binding protein
L3_060_057G1_scaffold_311_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21612..21977
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG8_9FIRM
UPF0122 protein HMPREF0866_00286 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_057G1_scaffold_311_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


21980..23359
DNA (1380bp) protein (460aa)
Signal recognition particle protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG7_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ffh; signal recognition particle protein
L3_060_057G1_scaffold_311_18
unknown

Not on your lists

23389..23637
DNA (249bp) protein (83aa)

This feature has no annotations

L3_060_057G1_scaffold_311_19
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23698..23937
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=3 Tax=Clostridiales RepID=G9YNL4_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
rpsP; 30S ribosomal protein S16
L3_060_057G1_scaffold_311_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23959..24189
DNA (231bp) protein (77aa)
UPF0109 protein HMPREF0866_00283 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG5_9FIRM
UPF0109 protein HMPREF0866_00283 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_057G1_scaffold_311_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24251..24748
DNA (498bp) protein (166aa)
Ribosome maturation factor RimM n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG4_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rimM; Ribosome maturation factor RimM
L3_060_057G1_scaffold_311_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24748..25089
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47699.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Dihydrofolate reductase
L3_060_057G1_scaffold_311_23
Tepidanaerobacter acetatoxydans, Tepidanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

25683..26498
DNA (816bp) protein (272aa)
Xylose isomerase domain-containing protein TIM barrel n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LW66_TEPAE
Xylose isomerase domain-containing protein TIM barrel
Xylose isomerase domain-containing protein TIM barrel {ECO:0000313|EMBL:CCP25405.1}; TaxID=1209989 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Tepidanaerobacter.;" source="Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1).;"
L3_060_057G1_scaffold_311_24
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

26495..27337
DNA (843bp) protein (281aa)
rrmA; ribosomal RNA large subunit methyltransferase A (EC:2.1.1.51)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YD07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13482.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_060_057G1_scaffold_311_25
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27398..28450)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NT87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN00650.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_060_057G1_scaffold_311_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28447..29106)
DNA (660bp) protein (220aa)
Precorrin-8X methylmutase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEY4_9FIRM
Precorrin-8X methylmutase {ECO:0000313|EMBL:EGJ46004.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_057G1_scaffold_311_27
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29103..30326)
DNA (1224bp) protein (408aa)
Precorrin-6Y C5,15-methyltransferase, CbiT subunit n=2 Tax=Oscillibacter RepID=U2QXH1_9FIRM
Precorrin-6Y C5,15-methyltransferase {ECO:0000313|EMBL:KJF39853.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_060_057G1_scaffold_311_28
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30317..31066)
DNA (750bp) protein (250aa)
precorrin-6x reductase (EC:1.3.1.54)
Precorrin-6x reductase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M6Y9_9FIRM
Precorrin-6x reductase {ECO:0000313|EMBL:EOS66750.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_060_057G1_scaffold_311_29
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31063..31791)
DNA (729bp) protein (243aa)
precorrin-3 methyltransferase (EC:2.1.1.131)
Precorrin-3B C17-methyltransferase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M7U0_9FIRM
Precorrin-3B C17-methyltransferase {ECO:0000313|EMBL:EOS66751.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L3_060_057G1_scaffold_311_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31788..32789)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEY2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46002.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Cobalamin biosynthesis protein CbiG
Displaying items 1-30 of 49 in total

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