ggKbase home page

L3_060_057G1_scaffold_358

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_057G1_scaffold_358_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..913)
DNA (912bp) protein (304aa)
RNA polymerase sigma factor SigA n=10 Tax=Clostridium perfringens RepID=H7CY33_CLOPF
sigA; RNA polymerase sigma factor RpoD
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_060_057G1_scaffold_358_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(919..2706)
DNA (1788bp) protein (596aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
dnaG; DNA primase (EC:2.7.7.-)
DNA primase n=2 Tax=Clostridium perfringens RepID=H7CY34_CLOPF
L3_060_057G1_scaffold_358_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2875..3903)
DNA (1029bp) protein (343aa)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1R392_CLOPF
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
dgtP; deoxyguanosinetriphosphate triphosphohydrolase-like protein
L3_060_057G1_scaffold_358_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4104..5183
DNA (1080bp) protein (360aa)
Putative spore coat protein n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1R393_CLOPF
Putative spore coat protein {ECO:0000313|EMBL:EDT25262.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
cotS; spore coat protein
L3_060_057G1_scaffold_358_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5235..7865)
DNA (2631bp) protein (877aa)
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EDT72844.1}; EC=2.7.9.1 {ECO:0000313|EMBL:EDT72844.1};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
podK; pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate phosphate dikinase n=8 Tax=Clostridium perfringens RepID=H7CY37_CLOPF
L3_060_057G1_scaffold_358_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7966..8598)
DNA (633bp) protein (211aa)
CBS domain-containing protein n=10 Tax=Clostridium perfringens RepID=H7CY38_CLOPF
hypothetical protein
CBS domain protein {ECO:0000313|EMBL:EDS80142.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L3_060_057G1_scaffold_358_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8803..9429)
DNA (627bp) protein (209aa)
UBA/TS-N domain-containing protein n=9 Tax=Clostridium perfringens RepID=H7CY39_CLOPF
UBA/TS-N domain-containing protein
UBA/TS-N domain protein {ECO:0000313|EMBL:EDT16248.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_060_057G1_scaffold_358_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9417..10088)
DNA (672bp) protein (224aa)
DNA repair protein RecO n=2 Tax=Clostridium perfringens RepID=RECO_CLOPE
recO; DNA repair protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_060_057G1_scaffold_358_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10188..11078)
DNA (891bp) protein (297aa)
GTPase Era n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=ERA_CLOP1
era; GTP-binding protein Era
GTPase Era {ECO:0000255|HAMAP-Rule:MF_00367}; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
L3_060_057G1_scaffold_358_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11087..11485)
DNA (399bp) protein (133aa)
cdd; cytidine deaminase (EC:3.5.4.5)
Cytidine deaminase {ECO:0000313|EMBL:EDT16289.1}; EC=3.5.4.5 {ECO:0000313|EMBL:EDT16289.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Cytidine deaminase n=6 Tax=Clostridium perfringens RepID=H7CY42_CLOPF
L3_060_057G1_scaffold_358_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11526..12227)
DNA (702bp) protein (234aa)
Diacylglycerol kinase/PAP2 family protein n=8 Tax=Clostridium perfringens RepID=H7CY43_CLOPF
diacylglycerol kinase/PAP2 family protein
Diacylglycerol kinase/PAP2 family protein {ECO:0000313|EMBL:EDT25362.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_060_057G1_scaffold_358_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12255..12761)
DNA (507bp) protein (169aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
Endoribonuclease YbeY n=5 Tax=Clostridium perfringens RepID=YBEY_CLOP1
metalloprotease
L3_060_057G1_scaffold_358_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12763..14817)
DNA (2055bp) protein (685aa)
Putative hydrolase n=2 Tax=Clostridium perfringens RepID=H7CY45_CLOPF
Putative hydrolase {ECO:0000313|EMBL:EIA16422.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
hydrolase
L3_060_057G1_scaffold_358_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14854..15990)
DNA (1137bp) protein (379aa)
Sporulation protein YqfD n=3 Tax=Clostridium perfringens RepID=H1CT02_CLOPF
stage IV sporulation protein
Putative stage IV sporulation protein {ECO:0000313|EMBL:EIA16423.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_060_057G1_scaffold_358_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15992..16273)
DNA (282bp) protein (94aa)
Sporulation protein YqfC n=5 Tax=Clostridium perfringens RepID=H7CY47_CLOPF
Sporulation protein YqfC {ECO:0000313|EMBL:EDT16290.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
yqfC; sporulation protein YqfC
L3_060_057G1_scaffold_358_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16497..16946)
DNA (450bp) protein (150aa)
GatB/Yqey domain-containing protein n=11 Tax=Clostridium perfringens RepID=H7CY48_CLOPF
GatB/Yqey domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:BAB81728.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_060_057G1_scaffold_358_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16996..17172)
DNA (177bp) protein (59aa)
30S ribosomal protein S21 n=11 Tax=Clostridium perfringens RepID=RS21_CLOP1
rpsU; 30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_060_057G1_scaffold_358_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17292..17636)
DNA (345bp) protein (115aa)
HIT family protein n=5 Tax=Clostridium perfringens RepID=H7CY50_CLOPF
HIT family protein {ECO:0000313|EMBL:EDT70362.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
HIT family protein
L3_060_057G1_scaffold_358_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17705..19009)
DNA (1305bp) protein (435aa)
MiaB-like tRNA modifying enzyme n=2 Tax=Clostridium perfringens RepID=Q0TNT5_CLOP1
MiaB-like tRNA modifying enzyme
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:EDT70368.1}; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
L3_060_057G1_scaffold_358_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19009..19761)
DNA (753bp) protein (251aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Clostridium perfringens F262 RepID=H7CY52_CLOPF
16S ribosomal RNA methyltransferase RsmE
L3_060_057G1_scaffold_358_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19784..20725)
DNA (942bp) protein (314aa)
prmA; ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
Ribosomal protein L11 methyltransferase n=8 Tax=Clostridium perfringens RepID=PRMA_CLOPE
L3_060_057G1_scaffold_358_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20951..21307)
DNA (357bp) protein (119aa)
GntR family transcriptional regulator n=7 Tax=Clostridium perfringens RepID=H7CY54_CLOPF
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:EIA16431.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_060_057G1_scaffold_358_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21309..22487)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BPK0_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDT16364.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
hypothetical protein
L3_060_057G1_scaffold_358_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22503..23330)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XIT3_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB81736.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_060_057G1_scaffold_358_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23317..24009)
DNA (693bp) protein (231aa)
ABC transporter, ATP-binding protein n=5 Tax=Clostridium perfringens RepID=B1BII5_CLOPF
ABC transporter
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDT16331.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_060_057G1_scaffold_358_26
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24189..25352)
DNA (1164bp) protein (388aa)
Chaperone protein DnaJ n=9 Tax=Clostridium perfringens RepID=DNAJ_CLOPE
dnaJ; molecular chaperone DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_060_057G1_scaffold_358_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25466..27325)
DNA (1860bp) protein (620aa)
Chaperone protein DnaK n=10 Tax=Clostridium perfringens RepID=DNAK_CLOP1
dnaK; molecular chaperone DnaK
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_060_057G1_scaffold_358_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27382..28008)
DNA (627bp) protein (209aa)
Protein GrpE n=5 Tax=Clostridium perfringens RepID=GRPE_CLOP1
grpE; heat shock protein GrpE
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
L3_060_057G1_scaffold_358_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28039..29058)
DNA (1020bp) protein (340aa)
Heat-inducible transcription repressor HrcA n=2 Tax=Clostridium perfringens RepID=HRCA_CLOP1
hrcA; heat-inducible transcription repressor
Heat-inducible transcription repressor HrcA {ECO:0000255|HAMAP-Rule:MF_00081}; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
L3_060_057G1_scaffold_358_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29255..30388)
DNA (1134bp) protein (378aa)
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RLH6_CLOPF
coproporphyrinogen III oxidase
Coproporphyrinogen III oxidase {ECO:0000313|EMBL:EIA16439.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Displaying items 1-30 of 46 in total

View Taxonomy