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L3_060_057G1_scaffold_390

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Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_057G1_scaffold_390_1
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..1441
DNA (1440bp) protein (480aa)
Major Facilitator Superfamily protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H559_SHIFL
Major Facilitator Superfamily protein {ECO:0000313|EMBL:EIQ75901.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
methyl viologen resistance protein SmvA
L3_060_057G1_scaffold_390_2
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1442..1882)
DNA (441bp) protein (147aa)
Glutathione-dependent formaldehyde-activating enzyme family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H560_SHIFL
Glutathione-dependent formaldehyde-activating enzyme family protein {ECO:0000313|EMBL:EIQ75902.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
aldehyde-activating protein
L3_060_057G1_scaffold_390_3
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1966..3045)
DNA (1080bp) protein (360aa)
Outer membrane porin protein ompD n=1 Tax=Shigella flexneri 1235-66 RepID=I6H561_SHIFL
Outer membrane porin protein ompD {ECO:0000313|EMBL:EIQ75903.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
porin
L3_060_057G1_scaffold_390_4
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3504..4385)
DNA (882bp) protein (294aa)
Inner membrane protein yddG n=1 Tax=Citrobacter sp. KTE32 RepID=R8VC96_9ENTR
Permease of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:CEJ64302.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
aromatic amino acid exporter
L3_060_057G1_scaffold_390_5
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4671..5258
DNA (588bp) protein (196aa)
Tat (Twin-arginine translocation) pathway signal sequence domain protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H564_SHIFL
Tat (Twin-arginine translocation) pathway signal sequence domain protein {ECO:0000313|EMBL:EIQ75906.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
sulfate ABC transporter substrate-binding protein
L3_060_057G1_scaffold_390_6
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5307..7718
DNA (2412bp) protein (804aa)
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:EIQ75907.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EIQ75907.1};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
Formate dehydrogenase, alpha subunit n=1 Tax=Shigella flexneri 1235-66 RepID=I6H565_SHIFL
formate dehydrogenase
L3_060_057G1_scaffold_390_7
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7731..8615
DNA (885bp) protein (295aa)
Formate dehydrogenase N beta subunit {ECO:0000313|EMBL:CEJ64304.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CEJ64304.1};; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
Formate dehydrogenase, beta subunit n=1 Tax=Shigella flexneri 1235-66 RepID=I6H566_SHIFL
formate dehydrogenase
L3_060_057G1_scaffold_390_8
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8608..9264
DNA (657bp) protein (219aa)
Formate dehydrogenase N gamma subunit {ECO:0000313|EMBL:CEJ64305.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CEJ64305.1};; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
Formate dehydrogenase, gamma subunit n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4B9I1_9ENTR
fdnI; formate dehydrogenase, nitrate-inducible,cytochrome b556
L3_060_057G1_scaffold_390_9
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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9393..9995
DNA (603bp) protein (201aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
Inorganic pyrophosphatase n=1 Tax=Shigella flexneri 1235-66 RepID=I6H568_SHIFL
potassium ABC transporter ATPase
L3_060_057G1_scaffold_390_10
Citrobacter rodentium, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10039..10323)
DNA (285bp) protein (95aa)
Putative plasmid maintenance protein n=1 Tax=Citrobacter rodentium (strain ICC168) RepID=D2TJA8_CITRI
plasmid maintenance protein
Putative plasmid maintenance protein {ECO:0000313|EMBL:CBG88322.1}; TaxID=637910 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter rodentium (strain ICC168) (Citrobacter freundii biotype; 4280).;"
L3_060_057G1_scaffold_390_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10323..10601)
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SJF0_CITFR
Proteic killer suppression protein {ECO:0000313|EMBL:ETX62957.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
plasmid maintenance protein
L3_060_057G1_scaffold_390_12
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10822..12537)
DNA (1716bp) protein (572aa)
ABC transporter family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H569_SHIFL
Glutathione-regulated potassium-efflux system ATP-binding protein {ECO:0000313|EMBL:CEJ64307.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
ABC transporter
L3_060_057G1_scaffold_390_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12847..14544)
DNA (1698bp) protein (566aa)
NAD-dependent malic enzyme {ECO:0000256|HAMAP-Rule:MF_01619}; Short=NAD-ME {ECO:0000256|HAMAP-Rule:MF_01619};; EC=1.1.1.38 {ECO:0000256|HAMAP-Rule:MF_01619};; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
NAD-dependent malic enzyme n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SJE8_CITFR
NAD-dependent malic enzyme
L3_060_057G1_scaffold_390_14
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14724..14864)
DNA (141bp) protein (47aa)
Stationary-phase-induced ribosome-associated protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H571_SHIFL
Stationary-phase-induced ribosome-associated protein {ECO:0000313|EMBL:EIQ75913.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
rpsV; 30S ribosomal subunit S22
L3_060_057G1_scaffold_390_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15092..15523
DNA (432bp) protein (144aa)
Peroxiredoxin osmC n=2 Tax=Enterobacteriaceae RepID=I6H572_SHIFL
Peroxiredoxin osmC {ECO:0000313|EMBL:ETX62953.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
peroxiredoxin OsmC
L3_060_057G1_scaffold_390_16
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15571..16341)
DNA (771bp) protein (257aa)
Beta-D-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:EIQ75915.1}; EC=1.1.1.30 {ECO:0000313|EMBL:EIQ75915.1};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
Beta-D-hydroxybutyrate dehydrogenase n=1 Tax=Shigella flexneri 1235-66 RepID=I6H573_SHIFL
3-hydroxybutyrate dehydrogenase
L3_060_057G1_scaffold_390_17
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16353..17744)
DNA (1392bp) protein (464aa)
Citrate transporter n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4B9J0_9ENTR
D-beta-hydroxybutyrate permease {ECO:0000313|EMBL:CEJ64312.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
transporter
L3_060_057G1_scaffold_390_18
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17785..18708)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. KTE32 RepID=R8VGX9_9ENTR
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:KKC61287.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
3-hydroxybutyryl-CoA dehydrogenase
L3_060_057G1_scaffold_390_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18698..19903)
DNA (1206bp) protein (402aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase n=1 Tax=Citrobacter sp. 30_2 RepID=C1M4L7_9ENTR
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ETX62949.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
L3_060_057G1_scaffold_390_20
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19914..20570)
DNA (657bp) protein (219aa)
3-oxoacid CoA-transferase, B subunit n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SJE0_CITFR
succinyl-CoA:3-ketoacid-CoA transferase
Succinyl-CoA:3-ketoacid-CoA transferase {ECO:0000313|EMBL:AHY13325.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L3_060_057G1_scaffold_390_21
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20573..21280)
DNA (708bp) protein (236aa)
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A {ECO:0000313|EMBL:CEJ64316.1}; EC=2.8.3.5 {ECO:0000313|EMBL:CEJ64316.1};; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
3-oxoacid CoA-transferase, A subunit n=1 Tax=Shigella flexneri 1235-66 RepID=I6HDD4_SHIFL
succinyl-CoA:3-ketoacid-CoA transferase
L3_060_057G1_scaffold_390_22
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21423..22313
DNA (891bp) protein (297aa)
Bacterial regulatory helix-turn-helix , lysR family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HDD5_SHIFL
LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase {ECO:0000313|EMBL:CEJ64317.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
LysR family transcriptional regulator
L3_060_057G1_scaffold_390_23
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22324..23265)
DNA (942bp) protein (314aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein domain n=1 Tax=Citrobacter sp. 30_2 RepID=C1M4L3_9ENTR
Dipeptide transport ATP-binding protein DppF (TC 3.A.1.5.2) {ECO:0000313|EMBL:CEJ64318.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
peptide ABC transporter ATP-binding protein
L3_060_057G1_scaffold_390_24
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23258..24244)
DNA (987bp) protein (329aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HDD7_SHIFL
Oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein {ECO:0000313|EMBL:EIQ78779.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
peptide ABC transporter substrate-binding protein
L3_060_057G1_scaffold_390_25
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24241..25137)
DNA (897bp) protein (299aa)
Putative D,D-dipeptide transport system permease protein ddpC n=1 Tax=Shigella flexneri 1235-66 RepID=I6HDD8_SHIFL
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) Putative hemine transporter ATP-binding subunit {ECO:0000313|EMBL:CEJ64320.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
D-ala-D-ala transporter subunit
L3_060_057G1_scaffold_390_26
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25134..26156)
DNA (1023bp) protein (341aa)
Putative D,D-dipeptide transport system permease protein ddpB n=1 Tax=Shigella flexneri 1235-66 RepID=I6HDD9_SHIFL
Putative D,D-dipeptide transport system permease protein ddpB {ECO:0000313|EMBL:EIQ78781.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
peptide ABC transporter permease
L3_060_057G1_scaffold_390_27
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26201..27763)
DNA (1563bp) protein (521aa)
Bacterial extracellular solute-binding s, 5 Middle family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HDE0_SHIFL
Bacterial extracellular solute-binding s, 5 Middle family protein {ECO:0000313|EMBL:EIQ78782.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
hypothetical protein
L3_060_057G1_scaffold_390_28
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27779..28366)
DNA (588bp) protein (196aa)
D-alanyl-D-alanine dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671}; Short=D-Ala-D-Ala dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; EC=3.4.13.22 {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
D-alanyl-D-alanine dipeptidase n=1 Tax=Shigella flexneri 1235-66 RepID=I6HDE1_SHIFL
D-alanyl-D-alanine dipeptidase
L3_060_057G1_scaffold_390_29
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28381..29247)
DNA (867bp) protein (289aa)
SIS domain protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HDE2_SHIFL
Transcriptional regulators {ECO:0000313|EMBL:CEJ64324.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
RpiR family transcriptional regulator
L3_060_057G1_scaffold_390_30
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29647..29976
DNA (330bp) protein (110aa)
Acid stress chaperone HdeB n=1 Tax=Shigella flexneri 1235-66 RepID=I6HDE3_SHIFL
Acid stress chaperone HdeB {ECO:0000256|HAMAP-Rule:MF_00947}; Flags: Precursor;; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
acid-resistance protein
Displaying items 1-30 of 44 in total

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