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L3_060_057G1_scaffold_394

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_060_057G1_scaffold_394_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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520..2163
DNA (1644bp) protein (548aa)
Phosphate:Na+ symporter n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEB0_9FIRM
Phosphate:Na+ symporter {ECO:0000313|EMBL:EGJ46410.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Na/Pi-cotransporter
L3_060_057G1_scaffold_394_2
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2217..2459)
DNA (243bp) protein (81aa)
S4 domain protein n=3 Tax=Clostridiales RepID=G9YUP1_9FIRM
S4 domain protein {ECO:0000313|EMBL:ERI62171.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_060_057G1_scaffold_394_3
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(2519..2794)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YHN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15072.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
histone family protein DNA-binding protein
L3_060_057G1_scaffold_394_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2872..3660)
DNA (789bp) protein (263aa)
Tetrapyrrole methylase/MazG family protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEE5_9FIRM
Tetrapyrrole methylase/MazG family protein {ECO:0000313|EMBL:EGJ46445.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_057G1_scaffold_394_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3702..5513)
DNA (1812bp) protein (604aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46444.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative transporter
L3_060_057G1_scaffold_394_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5547..6875)
DNA (1329bp) protein (443aa)
cytosine deaminase (EC:3.5.4.28)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46443.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_060_057G1_scaffold_394_7
unknown

Not on your lists

comp(6920..7054)
DNA (135bp) protein (45aa)

This feature has no annotations

L3_060_057G1_scaffold_394_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7063..7887)
DNA (825bp) protein (275aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Purine nucleoside phosphorylase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEE2_9FIRM
purine nucleoside phosphorylase I
L3_060_057G1_scaffold_394_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7898..8290)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEE1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46441.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_057G1_scaffold_394_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8607..9662
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEE8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46448.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ApbE family lipoprotein
L3_060_057G1_scaffold_394_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9659..10033
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEE9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46449.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_057G1_scaffold_394_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10008..10532
DNA (525bp) protein (175aa)
Heptaprenyl diphosphate synthase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEF0_9FIRM
Heptaprenyl diphosphate synthase {ECO:0000313|EMBL:EGJ46450.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
heptaprenyl diphosphate synthase component I
L3_060_057G1_scaffold_394_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10660..12060
DNA (1401bp) protein (467aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5S076_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQN60293.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_057G1_scaffold_394_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12442..13824
DNA (1383bp) protein (461aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
tRNA modification GTPase MnmE n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGT6_9FIRM
mnmE; tRNA modification GTPase MnmE
L3_060_057G1_scaffold_394_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14114..14725)
DNA (612bp) protein (204aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGU2_9FIRM
L3_060_057G1_scaffold_394_16
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(14821..15381)
DNA (561bp) protein (187aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YF01_9FIRM
L3_060_057G1_scaffold_394_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15378..17651)
DNA (2274bp) protein (758aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45580.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_057G1_scaffold_394_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17648..18736)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGU0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45579.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative hydrolase
L3_060_057G1_scaffold_394_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18784..19563)
DNA (780bp) protein (260aa)
Metallophosphoesterase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGT9_9FIRM
Metallophosphoesterase {ECO:0000313|EMBL:EGJ45578.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_057G1_scaffold_394_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19794..21722)
DNA (1929bp) protein (643aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PS32_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EFB74560.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
NADH:flavin oxidoreductase/NADH oxidase
L3_060_057G1_scaffold_394_21
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

comp(21726..22409)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6VLJ4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC93031.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
L3_060_057G1_scaffold_394_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22552..23457
DNA (906bp) protein (302aa)
Transcriptional regulator n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KM47_9FIRM
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CBL07949.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_060_057G1_scaffold_394_23
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23515..24246)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M877_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS67043.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
TraX family protein
L3_060_057G1_scaffold_394_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24402..25946)
DNA (1545bp) protein (515aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC:3.1.4.16)
Ribonuclease Y n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEB3_9FIRM
L3_060_057G1_scaffold_394_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26347..26829)
DNA (483bp) protein (161aa)
dCMP deaminase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGT2_9FIRM
dCMP deaminase {ECO:0000313|EMBL:EGJ45571.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative hydrolase
L3_060_057G1_scaffold_394_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26988..27383
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGT3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45572.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_057G1_scaffold_394_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27433..28437)
DNA (1005bp) protein (335aa)
DNA replication protein DnaC n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEB9_9FIRM
DNA replication protein DnaC {ECO:0000313|EMBL:EGJ46419.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_060_057G1_scaffold_394_28
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(28441..29391)
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YIH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15006.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_060_057G1_scaffold_394_29
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29575..29889
DNA (315bp) protein (105aa)
Cell division protein ZapA n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NR55_9FIRM
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_060_057G1_scaffold_394_30
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

29979..32063
DNA (2085bp) protein (695aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YI44_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14876.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
peptidase U32 family protein
Displaying items 1-30 of 40 in total

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